[R-SIG-Mac] [External] Re: crash due to rgl and base graphics conflict
Richard M. Heiberger
rmh @end|ng |rom temp|e@edu
Fri May 29 19:33:33 CEST 2020
this prevents the crash
> rgl.quit()
> plot(1:10)
>
On Fri, May 29, 2020 at 12:35 PM Richard M. Heiberger <rmh using temple.edu> wrote:
>
> I have the same Xquartz as you.
> I have rgl-0.100.50 from CRAN
> Apple is macOS Catalina, Version 10.15.4
> Do you need hardware information?
> MacBpok Air (13 -inch, Mid 2012)
> Processor 2GHz Dual-Core Intel Core i7
> Memory 8 GB 1600 MHz DDR3
> Graphics Intel HD Graphics 4000 1536 MB
>
>
> from the Terminal App:
> The Apple Crash Report is in the attached tmp.txt
> I didn't send it to Apple.
>
> R version 4.0.0 (2020-04-24) -- "Arbor Day"
>
> Copyright (C) 2020 The R Foundation for Statistical Computing
>
> Platform: x86_64-apple-darwin17.0 (64-bit)
>
>
> R is free software and comes with ABSOLUTELY NO WARRANTY.
>
> You are welcome to redistribute it under certain conditions.
>
> Type 'license()' or 'licence()' for distribution details.
>
>
> Natural language support but running in an English locale
>
>
> R is a collaborative project with many contributors.
>
> Type 'contributors()' for more information and
>
> 'citation()' on how to cite R or R packages in publications.
>
>
> Type 'demo()' for some demos, 'help()' for on-line help, or
>
> 'help.start()' for an HTML browser interface to help.
>
> Type 'q()' to quit R.
>
>
> > library(rgl)
>
> > plot(1:10)
>
> > 2020-05-29 12:30:00.536 R[24961:3275889] *** Assertion failure in BOOL NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(), /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
>
> 2020-05-29 12:30:00.543 R[24961:3275889] *** Terminating app due to
> uncaught exception 'NSInternalInconsistencyException', reason:
> 'NSScreen reconfig must only happen on the main thread.'
>
> *** First throw call stack:
>
> (
>
> 0 CoreFoundation 0x00007fff371698d7
> __exceptionPreprocess + 250
>
> 1 libobjc.A.dylib 0x00007fff6ff47a9e
> objc_exception_throw + 48
>
> 2 CoreFoundation 0x00007fff37192bb0
> +[NSException raise:format:arguments:] + 88
>
> 3 Foundation 0x00007fff398de456
> -[NSAssertionHandler
> handleFailureInFunction:file:lineNumber:description:] + 166
>
> 4 AppKit 0x00007fff34503083
> +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +
> 361
>
> 5 AppKit 0x00007fff34e4bda8
> _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
>
> 6 AppKit 0x00007fff34502c85
> -[NSApplication(ScreenHandling) _reactToDockChanged] + 144
>
> 7 AppKit 0x00007fff345024dc
> _NSCGSDockMessageReceive + 268
>
> 8 HIToolbox 0x00007fff35d34a3c
> _ZL12DockCallbackjjPvS_ + 1987
>
> 9 HIServices 0x00007fff3539c8ec
> dockClientNotificationProc + 217
>
> 10 SkyLight 0x00007fff6626f174
> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
> 1002
>
> 11 SkyLight 0x00007fff6626de71
> CGSSnarfAndDispatchDatagrams + 1671
>
> 12 SkyLight 0x00007fff6649d5a5
> SLSGetNextEventRecordInternal + 83
>
> 13 SkyLight 0x00007fff6633bfbe
> SLEventCreateNextEvent + 136
>
> 14 libXplugin.1.dylib 0x000000010686df0c
> ___xp_init_service_cg_event_port_block_invoke + 104
>
> 15 libdispatch.dylib 0x00007fff7108d658
> _dispatch_client_callout + 8
>
> 16 libdispatch.dylib 0x00007fff7108f818
> _dispatch_continuation_pop + 414
>
> 17 libdispatch.dylib 0x00007fff7109f4be
> _dispatch_source_invoke + 2084
>
> 18 libdispatch.dylib 0x00007fff71092af6
> _dispatch_lane_serial_drain + 263
>
> 19 libdispatch.dylib 0x00007fff710935d6
> _dispatch_lane_invoke + 363
>
> 20 libdispatch.dylib 0x00007fff7109cc09
> _dispatch_workloop_worker_thread + 596
>
> 21 libsystem_pthread.dylib 0x00007fff712eba3d
> _pthread_wqthread + 290
>
> 22 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread + 15
>
> )
>
> libc++abi.dylib: terminating with uncaught exception of type NSException
>
> zsh: abort R
>
> rmh using rmhs-Air ~ %
>
>
> On Fri, May 29, 2020 at 12:16 PM Duncan Murdoch
> <murdoch.duncan using gmail.com> wrote:
> >
> > I'm not seeing that with R-patched r78557, run from the console. I'm
> > not sure I have the same MacOS version as you (R prints the same thing,
> > Apple says High Sierra 10.13.6). I tried with the CRAN binary of rgl
> > 0.100.54. I'd guess the version of XQuartz may be important: I'm not
> > seeing rgl in the call stack, but libXplugin is there. Mine is "XQuartz
> > 2.7.11 (xorg-server 1.18.4)".
> >
> > Duncan Murdoch
> >
> >
> >
> > On 29/05/2020 11:44 a.m., Richard M. Heiberger wrote:
> > > R version 4.0.0 (2020-04-24) -- "Arbor Day"
> > > Copyright (C) 2020 The R Foundation for Statistical Computing
> > > Platform: x86_64-apple-darwin17.0 (64-bit)
> > >
> > > R is free software and comes with ABSOLUTELY NO WARRANTY.
> > > You are welcome to redistribute it under certain conditions.
> > > Type 'license()' or 'licence()' for distribution details.
> > >
> > > Natural language support but running in an English locale
> > >
> > > R is a collaborative project with many contributors.
> > > Type 'contributors()' for more information and
> > > 'citation()' on how to cite R or R packages in publications.
> > >
> > > Type 'demo()' for some demos, 'help()' for on-line help, or
> > > 'help.start()' for an HTML browser interface to help.
> > > Type 'q()' to quit R.
> > >
> > >> if(identical(getOption('pager'), file.path(R.home('bin'), 'pager'))) options(pager='cat') # rather take the ESS one
> > >> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient', show.error.locations=TRUE)
> > >> version
> > > _
> > > platform x86_64-apple-darwin17.0
> > > arch x86_64
> > > os darwin17.0
> > > system x86_64, darwin17.0
> > > status
> > > major 4
> > > minor 0.0
> > > year 2020
> > > month 04
> > > day 24
> > > svn rev 78286
> > > language R
> > > version.string R version 4.0.0 (2020-04-24)
> > > nickname Arbor Day
> > >>
> > >> library(rgl)
> > >> plot(1:10)
> > >>
> > >
> > > Process R abort trap: 6 at Fri May 29 11:32:59 2020
> > > 2020-05-29 11:32:59.542 R[24448:3255600] *** Assertion failure in BOOL
> > > NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(),
> > > /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
> > > 2020-05-29 11:32:59.560 R[24448:3255600] *** Terminating app due to
> > > uncaught exception 'NSInternalInconsistencyException', reason:
> > > 'NSScreen reconfig must only happen on the main thread.'
> > > *** First throw call stack:
> > > (
> > > 0 CoreFoundation 0x00007fff371698d7
> > > __exceptionPreprocess + 250
> > > 1 libobjc.A.dylib 0x00007fff6ff47a9e
> > > objc_exception_throw + 48
> > > 2 CoreFoundation 0x00007fff37192bb0
> > > +[NSException raise:format:arguments:] + 88
> > > 3 Foundation 0x00007fff398de456
> > > -[NSAssertionHandler
> > > handleFailureInFunction:file:lineNumber:description:] + 166
> > > 4 AppKit 0x00007fff34503083
> > > +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +
> > > 361
> > > 5 AppKit 0x00007fff34e4bda8
> > > _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
> > > 6 AppKit 0x00007fff34502c85
> > > -[NSApplication(ScreenHandling) _reactToDockChanged] + 144
> > > 7 AppKit 0x00007fff345024dc
> > > _NSCGSDockMessageReceive + 268
> > > 8 HIToolbox 0x00007fff35d34a3c
> > > _ZL12DockCallbackjjPvS_ + 1987
> > > 9 HIServices 0x00007fff3539c8ec
> > > dockClientNotificationProc + 217
> > > 10 SkyLight 0x00007fff6626f174
> > > _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
> > > 1002
> > > 11 SkyLight 0x00007fff6626de71
> > > CGSSnarfAndDispatchDatagrams + 1671
> > > 12 SkyLight 0x00007fff6649d5a5
> > > SLSGetNextEventRecordInternal + 83
> > > 13 SkyLight 0x00007fff6633bfbe
> > > SLEventCreateNextEvent + 136
> > > 14 libXplugin.1.dylib 0x000000010ffa5f0c
> > > ___xp_init_service_cg_event_port_block_invoke + 104
> > > 15 libdispatch.dylib 0x00007fff7108d658
> > > _dispatch_client_callout + 8
> > > 16 libdispatch.dylib 0x00007fff7108f818
> > > _dispatch_continuation_pop + 414
> > > 17 libdispatch.dylib 0x00007fff7109f4be
> > > _dispatch_source_invoke + 2084
> > > 18 libdispatch.dylib 0x00007fff71092af6
> > > _dispatch_lane_serial_drain + 263
> > > 19 libdispatch.dylib 0x00007fff710935d6
> > > _dispatch_lane_invoke + 363
> > > 20 libdispatch.dylib 0x00007fff7109cc09
> > > _dispatch_workloop_worker_thread + 596
> > > 21 libsystem_pthread.dylib 0x00007fff712eba3d
> > > _pthread_wqthread + 290
> > > 22 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread + 15
> > > )
> > > libc++abi.dylib: terminating with uncaught exception of type NSException
> > >
> > > _______________________________________________
> > > R-SIG-Mac mailing list
> > > R-SIG-Mac using r-project.org
> > > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> > >
> >
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