[R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina

[Brandon Hurr]

Thanks Bob.

I did this and it did not fix it sadly.
I downloaded the Debug version of R-GUI and captured the following
after clicking on the same file (which did cause it to crash again)
Here is the console log for the R PID (889 in this instance) from
loading R to then clicking to load the same file (which froze my
system again):
https://gist.github.com/bhive01/5efa02237085c7a3ccf6d137e04f7c45
Here is the full Apple Crash Log that came up after I force quit R:
https://gist.github.com/bhive01/0eeb32d0a666f875e83440268b69aefd

I hope this is helpful. Please let me know if I need to dig more and
recommendations for doing so.

Thanks,
B

On Fri, May 1, 2020 at 5:54 PM Bob Rudis <bob using rud.is> wrote:
>
> Suggestion: try adding R.app to "Full Disk Access" in the Privacy tab
> under Security & Privacy system preferences.
>
> I'm not experiencing these issues (just now when I tried it; I
> generally don't use R.app)
>
> On Fri, May 1, 2020 at 4:54 PM Brandon Hurr <brandon.hurr using gmail.com> wrote:
> >
> > I'm going to add to the pile on this one. It's hard to nail down
> > though. I was able to load Hiroshi's test.R script after loading up
> > R-GUI 7827 and just now 7832. I loaded it from multiple directories by
> > clicking on it.
> > That said, I've been having many issues locking up R-GUI on my 2019
> > MBAir since upgrading to R4.0.0. I can click and load R-GUI with a
> > script file, but if I want to load another script it gives me the
> > colored pinwheel of death. Sometimes it will load up R-GUI, but then
> > pinwheel of death on loading a lengthy script. I'm not sure the length
> > is the issue.
> >
> > I played around with the console a bit and noticed these messages pop
> > up when it locks up R:
> > error    13:49:54.173449-0700    kernel    Sandbox: garcon(763)
> > deny(1) file-read-xattr /Users/brandonhurr/Dropbox (BioLumic Ltd)/Data
> > standardisation/Database Converts/Conversion script DEV.R
> > error    13:49:54.243397-0700    kernel    Sandbox: garcon(763)
> > deny(1) file-read-xattr /Users/brandonhurr/Dropbox (BioLumic Ltd)/Data
> > standardisation/Database Converts
> > error    13:49:54.312989-0700    kernel    Sandbox: garcon(763)
> > deny(1) file-read-xattr /Users/brandonhurr/Dropbox (BioLumic Ltd)/Data
> > standardisation
> > error    13:49:54.344345-0700    kernel    Sandbox: garcon(763)
> > deny(1) file-read-xattr /Users/brandonhurr/Dropbox (BioLumic Ltd)
> >
> > A rough guess here is that the sandboxing isn't working right (or is?)
> > and is blocking access of R-GUI to the file which then locks up
> > because it's waiting for data?
> >
> > Anyone else seeing this behavior and have a better idea how to pin it down?
> >
> > Thanks,
> > B
> >
> >
> > On Thu, Apr 30, 2020 at 6:07 AM Hiroshi Hakoyama
> > <hiroshi-hakoyama using nagano.ac.jp> wrote:
> > >
> > > Dear All,
> > >
> > > Environment:
> > > R version 4.0.0 (2020-04-24) -- "Arbor Day"
> > > [R.app GUI 1.71 (7827) x86_64-apple-darwin17.0]
> > > macOS: Mojave and Catalina
> > > Removed file for the test: .Rapp.history
> > >
> > > Description:
> > > R.app crashes when a large file (e.g., test.R) is double-clicked on Mojave and Catalina. The crash does not occur on High Sierra. Small source files (e.g., test2.R) do not cause the crash on Mojave and Catalina.
> > >
> > > How-To-Repeat:
> > > Double-click test.R (or open test.R using R.app) on Catalina or Mojave.
> > >
> > > Fix:
> > > unknown
> > >
> > > Crash Report is too large to paste to the email.
> > >
> > >
> > > Best regards,
> > >
> > > Hiroshi Hakoyama
> > > Nagano University
> > >
> > > test.R
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > ###############################################################################
> > > x <- rnorm(100000)
> > > y <- rnorm(100000)
> > > hist(x)
> > > hist(y)
> > >
> > > test2.R
> > > x <- rnorm(100000)
> > > y <- rnorm(100000)
> > > hist(x)
> > > hist(y)
> > >
> > > system.log
> > > Apr 30 20:54:40 ec7 R[1147]: assertion failed: 19E287: libxpc.dylib + 92807 [32B0E31E-9DA3-328B-A962-BC9591B93537]: 0x89
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