[R-SIG-Mac] Problem R-4.0 beta and Rmpfr (pre-release)
c@rste@@dorm@@@ m@iii@g oii biom@u@i-ireiburg@de
c@rste@@dorm@@@ m@iii@g oii biom@u@i-ireiburg@de
Thu Apr 16 09:21:02 CEST 2020
Can confirm problem:
> dpois(mpfr(x, 120), 1000)
*** caught illegal operation ***
address 0x1116f7c42, cause 'illegal opcode'
Traceback:
1: .class1(object)
2: as(value, dataClass)
3: setDataPart(x, .Call(Math_mpfr, x, .Math.codes[[.Generic]]))
4: exp(-lambda)
5: exp(-lambda)
6: dpois(mpfr(x, 120), 1000)
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection:
> sessionInfo() # after restart
R version 4.0.0 alpha (2020-04-01 r78130)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Mojave 10.14.6
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.0.0
Carsten
> On 16. Apr 2020, at 08:56, Berend Hasselman <bhh using xs4all.nl> wrote:
>
>
> If the pre-release binary of Rmpfr is intended for the R-4.0 beta then I am experiencing "illegal operations" with "illegal opcode" errors.
>
> <sessionInfo>
>
> R version 4.0.0 beta (2020-04-14 r78227)
> Platform: x86_64-apple-darwin17.0 (64-bit)
> Running under: macOS Catalina 10.15.4
>
> Matrix products: default
> BLAS: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
> LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
>
> locale:
> [1] en_IE.UTF-8/en_IE.UTF-8/en_IE.UTF-8/C/en_IE.UTF-8/en_IE.UTF-8
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> loaded via a namespace (and not attached):
> [1] compiler_4.0.0
>
> </sessionInfo>
>
> A simple example session is
>
> <(in+output)>
>
>> library(gmp,lib.loc=".");library(Rmpfr,lib.loc=".")
>
> Attaching package: 'gmp'
>
> The following objects are masked from 'package:base':
>
> %*%, apply, crossprod, matrix, tcrossprod
>
> C code of R package 'Rmpfr': GMP using 64 bits per limb
>
>
> Attaching package: 'Rmpfr'
>
> The following object is masked from 'package:gmp':
>
> outer
>
> The following objects are masked from 'package:stats':
>
> dbinom, dgamma, dnorm, dpois, pnorm
>
> The following objects are masked from 'package:base':
>
> cbind, pmax, pmin, rbind
>
>> x <- 1400+ 0:10
>> print(dpois(x, 1000), digits =18) ## standard R's double precision
> [1] 1.46677334419659338e-33 1.04694742626454156e-33 7.46752800474106016e-34
> [4] 5.32254312525935864e-34 3.79098513195210765e-34 2.69821005832831136e-34
> [7] 1.91906832029070091e-34 1.36394336907638670e-34 9.68709779173582432e-35
> [10] 6.87515812046484244e-35 4.87599866699657026e-35
>> dpois(mpfr(x, 120), 1000)## more accuracy for the same
>
> *** caught illegal operation ***
> address 0x10a6e1c42, cause 'illegal opcode'
>
> Traceback:
> 1: .class1(object)
> 2: as(value, dataClass)
> 3: setDataPart(x, .Call(Math_mpfr, x, .Math.codes[[.Generic]]))
> 4: exp(-lambda)
> 5: exp(-lambda)
> 6: dpois(mpfr(x, 120), 1000)
>
> Possible actions:
> 1: abort (with core dump, if enabled)
> 2: normal R exit
> 3: exit R without saving workspace
> 4: exit R saving workspace
>
> </(in+output)
>
> Other trials seem to experience similar issues.
>
>
> regards
>
> Berend
>
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