[R-SIG-Mac] PCRE JIT compilation error

[peter dalgaard]

Yes, this has been happening to a number of people, including Simon Urbanek...

Oddly enough, I'm seeing nothing of the sort on my slightly different build setup: 

clang8 + gfortran6.1 as per https://cran.r-project.org/bin/macosx/tools
PCRE2 from http://mac.r-project.org/libs/ 

$ cat config.site 
prefix=$HOME/tmp
CC=clang
CXX=clang++
with_blas="-framework vecLib"
with_lapack=yes
x_includes=/opt/X11/include
x_libraries=/opt/X11/lib
CURL_CONFIG=/usr/bin/curl-config

(And no, it is not because JIT is off:

> options("PCRE_use_JIT")
$PCRE_use_JIT
[1] TRUE

)


-pd

> On 1 Apr 2020, at 13:30 , Bryan Hanson <hanson using depauw.edu> wrote:
> 
> On a fresh install of the binary from mac.r-project.org, if I simply do:
> 
> library()
> 
> I see:
> 
> R > library()
> There were 30 warnings (use warnings() to see them)
> R > warnings()
> Warning messages:
> 1: In strsplit(x, "\n[ \t\n]*\n", perl = TRUE) : PCRE JIT compilation error
> 	'no more memory'
> 2: In FUN(X[[i]], ...) : PCRE JIT compilation error
> 	'no more memory'
> 
> etc.  The usual window with installed packages does open.
> 
> Starting the conversation here on the Mac list, though it may be a bigger problem.
> 
> Thanks, Bryan
> ****************
> Prof. Bryan Hanson (emeritus)
> Dept of Chemistry & Biochemistry
> DePauw University
> Greencastle IN 46135 USA
> Web: academic.depauw.edu/~hanson/index.html
> Repo: github.com/bryanhanson
> Nerdy Blog: ChemoSpec.org
> The Twit: @ProfBryanHanson
> I’m usually @ -4 GMT/UTC
> 
> R > sessionInfo()
> R version 4.0.0 alpha (2020-03-29 r78109)
> Platform: x86_64-apple-darwin17.0 (64-bit)
> Running under: macOS Mojave 10.14.6
> 
> Matrix products: default
> BLAS:   /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
> LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods  
> [7] base     
> 
> loaded via a namespace (and not attached):
> [1] compiler_4.0.0
> 
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> 
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-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes using cbs.dk  Priv: PDalgd using gmail.com