[R-SIG-Mac] Problem with Devel version (R 3.6) for Mac OS X
peter dalgaard
pd@|gd @end|ng |rom gm@||@com
Mon Apr 15 21:39:17 CEST 2019
I can confirm this. This time, also the tarball seems out of sync. Simon?
-pd
> On 15 Apr 2019, at 21:21 , Pages, Herve <hpages using fredhutch.org> wrote:
>
> I have a similar problem. Today https://mac.r-project.org/ says:
>
> R-3.6-branch
> 3.6.0 beta
> (2019/04/14, r76394)
>
> but after downloading and installing it I got:
>
> R version 3.6.0 alpha (2019-04-09 r76363)
>
> Thanks,
> H.
>
> On 4/11/19 08:11, Bryan Hanson wrote:
>> Sorry if I was not clear. I downloaded R-3.6-branch-el-capitan-signed.pkg from https://urldefense.proofpoint.com/v2/url?u=https-3A__mac.r-2Dproject.org_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs&s=tOYTB-iEp3DlgJ-5SEny_fPYOJHf_rO6qqg9TtJuIqk&e=<https://urldefense.proofpoint.com/v2/url?u=https-3A__mac.r-2Dproject.org_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs&s=tOYTB-iEp3DlgJ-5SEny_fPYOJHf_rO6qqg9TtJuIqk&e=> (redirects from r.research.att.com <https://urldefense.proofpoint.com/v2/url?u=http-3A__r.research.att.com_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs&s=ehDMrFC-4v3rt9_SEm-qgPJvcGrOE-QzaN7v9dUoa78&e=>), which is the binary + GUI with installer. Once it installed, the start up message said it was r76245, but the web site said r76363.
>>
>> Bryan
>>
>>> On Apr 11, 2019, at 10:41 AM, peter dalgaard <pdalgd using gmail.com> wrote:
>>>
>>> Nit: 3.6.x is not the devel version at this point (even if unreleased). Dunno why there is no actual R-devel (3.7.x) binaries.
>>>
>>> However, the tarball does have (in Rversion.h)
>>>
>>> #define R_SVN_REVISION 76363
>>>
>>> and SVN-REVISION likewise
>>>
>>> are you seeing something different with the .pkg version?
>>>
>>> -pd
>>>
>>>
>>>
>>>> On 11 Apr 2019, at 16:09 , Bryan Hanson <hanson using depauw.edu> wrote:
>>>>
>>>> Thanks Simon for getting that build running again. I’m not sure if it matters, but the website says the current version is r76363 but what was downloaded was r76245.
>>>>
>>>> Bryan
>>>>
>>>>> On Apr 11, 2019, at 8:30 AM, Simon Urbanek <Simon.Urbanek using r-project.org> wrote:
>>>>>
>>>>> Elizabeth,
>>>>>
>>>>> yes, if the status say FAILED then you cannot install that R version since it doesn't work. However, the current nightly build shows OK so you please try that one.
>>>>>
>>>>> Cheers,
>>>>> Simon
>>>>>
>>>>>
>>>>>> On Apr 8, 2019, at 7:38 PM, Elizabeth Purdom <epurdom using stat.berkeley.edu> wrote:
>>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> I am wanting to download the development version for R. I have Mac OS X 11.6 and I usually go to https://urldefense.proofpoint.com/v2/url?u=http-3A__r.research.att.com_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs&s=ehDMrFC-4v3rt9_SEm-qgPJvcGrOE-QzaN7v9dUoa78&e=<https://urldefense.proofpoint.com/v2/url?u=http-3A__r.research.att.com_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs&s=ehDMrFC-4v3rt9_SEm-qgPJvcGrOE-QzaN7v9dUoa78&e=> and download a dmg from there. However, the devel version is listed as 3.5.2 (2018/12/20, r75870), not 3.6. When I downloaded it anyway, I couldn’t use the development version of bioconductor because I didn’t have the right R.
>>>>>>
>>>>>> Also, the R.app for that dmg did not work (only the command line worked), with a message that I should check to make sure I have the right OS (see full report below). The website just says el-capitan, which I do have. (the log for the development version also says make FAILED).
>>>>>>
>>>>>> I feel like somehow I’m getting a non-updated version of a mirror or something.
>>>>>>
>>>>>> Thanks for any help,
>>>>>> Elizabeth Purdom
>>>>>>
>>>>>> -------------
>>>>>> Associate Professor
>>>>>> Department of Statistics, UC Berkeley
>>>>>>
>>>>>> (510) 642-6154 (o) | (510) 642-7892 (f) | epurdom using stat.berkeley.edu
>>>>>> Mailing: 367 Evans Hall, Berkeley, CA 94720-3860
>>>>>> Office: 433 Evans Hall
>>>>>>
>>>>>>
>>>>>> System Software Overview:
>>>>>>
>>>>>> System Version: OS X 10.11.6 (15G22010)
>>>>>> Kernel Version: Darwin 15.6.0
>>>>>>
>>>>>>
>>>>>> Error message:
>>>>>>
>>>>>> Process: R [56142]
>>>>>> Path: /Applications/R.app/Contents/MacOS/R
>>>>>> Identifier: org.R-project.R
>>>>>> Version: ???
>>>>>> Code Type: X86-64 (Native)
>>>>>> Parent Process: ??? [1]
>>>>>> Responsible: R [56142]
>>>>>> User ID: 501
>>>>>>
>>>>>> Date/Time: 2019-04-08 16:30:33.337 -0700
>>>>>> OS Version: Mac OS X 10.11.6 (15G22010)
>>>>>> Report Version: 11
>>>>>> Anonymous UUID: 8A5D3691-2F85-AD45-A9AA-66C6B7146343
>>>>>>
>>>>>> Sleep/Wake UUID: 182C0109-41E6-4708-A6E8-2A8153BE1F27
>>>>>>
>>>>>> Time Awake Since Boot: 450000 seconds
>>>>>> Time Since Wake: 260 seconds
>>>>>>
>>>>>> System Integrity Protection: enabled
>>>>>>
>>>>>> Crashed Thread: 0
>>>>>>
>>>>>> Exception Type: EXC_BREAKPOINT (SIGTRAP)
>>>>>> Exception Codes: 0x0000000000000002, 0x0000000000000000
>>>>>> Exception Note: EXC_CORPSE_NOTIFY
>>>>>>
>>>>>> Application Specific Information:
>>>>>> dyld: launch, loading dependent libraries
>>>>>>
>>>>>> Dyld Error Message:
>>>>>> Library not loaded: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libR.dylib
>>>>>> Referenced from: /Applications/R.app/Contents/MacOS/R
>>>>>> Reason: image not found
>>>>>>
>>>>>> Binary Images:
>>>>>> 0x7fff63820000 - 0x7fff63857a47 dyld (360.22) <6B9CD3BA-2D60-3629-A0CB-AB810F55E8DD> /usr/lib/dyld
>>>>>>
>>>>>> Model: MacBookAir7,2, BootROM MBA71.0178.B00, 2 processors, Intel Core i7, 2.2 GHz, 8 GB, SMC 2.27f2
>>>>>> Graphics: Intel HD Graphics 6000, Intel HD Graphics 6000, Built-In
>>>>>> Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 0x483943434E4E4E384A544D4C41522D4E544D
>>>>>> Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 0x483943434E4E4E384A544D4C41522D4E544D
>>>>>> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x117), Broadcom BCM43xx 1.0 (7.21.95.178.1a2)
>>>>>> Bluetooth: Version 4.4.6f4, 3 services, 19 devices, 1 incoming serial ports
>>>>>> Network Service: AirPort, AirPort, en0
>>>>>> Serial ATA Device: APPLE SSD SM0512G, 500.28 GB
>>>>>> USB Device: USB 3.0 Bus
>>>>>> USB Device: BRCM20702 Hub
>>>>>> USB Device: Bluetooth USB Host Controller
>>>>>> Thunderbolt Bus: MacBook Air, Apple Inc., 27.2
>>>>>>
>>>>>>
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>>>>>>
>>>>>> _______________________________________________
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>>> --
>>> Peter Dalgaard, Professor,
>>> Center for Statistics, Copenhagen Business School
>>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
>>> Phone: (+45)38153501
>>> Office: A 4.23
>>> Email: pd.mes using cbs.dk Priv: PDalgd using gmail.com
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>
>> [[alternative HTML version deleted]]
>>
>> _______________________________________________
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>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages using fredhutch.org
> Phone: (206) 667-5791
> Fax: (206) 667-1319
--
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes using cbs.dk Priv: PDalgd using gmail.com
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