[R-SIG-Mac] Installing R on 10.14 (Mojave)

[Timothy Bates]

Thanks Marc!

I didn't think the `xcode-select --install` was needed any longer.
Did that and all worked well with the `macOS_SDK_headers_for_macOS_10.14.pkg`
install.

Many thanks again!
tim



On Tue, Sep 25, 2018 at 5:36 PM Marc Schwartz <marc_schwartz using me.com> wrote:

> Hi Tim,
>
> Be sure that you are running the latest version of Xcode:
>
>   https://itunes.apple.com/us/app/xcode/id497799835?mt=12
>
> and that you also install/re-install the command line tools afterwards:
>
>   xcode-select --install
>
> With a major macOS version upgrade like this, you should do a fully clean
> install of R and afterwards, of XQuartz:
>
>   https://www.xquartz.org
>
> Regards,
>
> Marc
>
>
> > On Sep 25, 2018, at 11:59 AM, Tim Bates <timothy.c.bates using gmail.com>
> wrote:
> >
> > fyi
> >
> > home$ sudo installer -pkg \
> >>
> /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg
> \
> >> -target /
> > Password:
> > installer: Error - the package path specified was invalid:
> '/Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg'.
> > spearman:OpenMx tim$
> >
> >
> >> On 25 Sep 2018, at 1:04 pm, Marc Schwartz via R-SIG-Mac <
> r-sig-mac using r-project.org> wrote:
> >>
> >> Thanks to both of you for the pointers on this.
> >>
> >> I have not used a dark theme since my Fedora days. Still getting used
> to it... :-)
> >>
> >> Regards,
> >>
> >> Marc Schwartz
> >>
> >>
> >>> On Sep 25, 2018, at 5:55 AM, peter dalgaard <pdalgd using gmail.com> wrote:
> >>>
> >>> [Oops. Forgot to copy this back to R-sig-mac, it seems...]
> >>>
> >>> Thanks, Brian,
> >>>
> >>> Yes, we have previously learned the hard way that timing R releases
> too close to MacOS updates is a bad idea...
> >>>
> >>> The manual updates haven't made it to CRAN yet, you need to look in
> the sources.
> >>>
> >>> For those who might be curious, but lazy:
> >>>
> >>>>>>>
> >>> As from macOS 10.14 (‘Mojave’) an additional step is needed to install
> the headers to /usr/include: from a Terminal run
> >>>
> >>> sudo installer -pkg \
> >>>
> /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg
> \
> >>> -target /
> >>>
> >>> Alternatively, change the include path via
> >>>
> >>> CPPFLAGS="-isystem
> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include"
> >>> <<<<
> >>>
> >>>
> >>> Incidentally, probably unrelated, I discovered that the R-patched
> snapshots had stalled since Sep 13 due to an SVN database error. This
> should be cleared up now.
> >>>
> >>> -pd
> >>>
> >>>> On 25 Sep 2018, at 08:59 , Prof Brian Ripley <ripley using stats.ox.ac.uk>
> wrote:
> >>>>
> >>>> A heads up:
> >>>>
> >>>> The Mojave update removes /usr/include and (re)installing the Command
> Line Tools does not put the standard system headers there.  Workarounds are
> now described in the R-admin manual for R-devel and R-patched.
> >>>>
> >>>> --
> >>>> Brian D. Ripley,                  ripley using stats.ox.ac.uk
> >>>> Emeritus Professor of Applied Statistics, University of Oxford
> >>>>
> >>>> _______________
> <https://maps.google.com/?q=_______________&entry=gmail&source=g>
> ________________________________
> >>>> R-SIG-Mac mailing list
> >>>> R-SIG-Mac using r-project.org
> >>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >>>
> >>> --
> >>> Peter Dalgaard, Professor,
> >>> Center for Statistics, Copenhagen Business School
> >>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
> >>> Phone: (+45)38153501 <+45%2038%2015%2035%2001>
> >>> Office: A 4.23
> >>> Email: pd.mes using cbs.dk  Priv: PDalgd using gmail.com
>
>

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