[R-SIG-Mac] Tools Update for R3.5?
rkoenker @ending from illinoi@@edu
Sun May 27 12:15:36 CEST 2018
Maybe this would provide a little more explicit information about what is going wrong:
/usr/local/clang6/bin/clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/clang6/include -fPIC -Wall -g -O2 -c init.c -o init.o
In file included from init.c:1:
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:34:11: fatal error: 'string.h' file not
# include <string.h> /* for memcpy, memset */
1 error generated.
make: *** [init.o] Error 1
> On May 26, 2018, at 5:35 PM, Koenker, Roger W <rkoenker using illinois.edu> wrote:
> Humm… without the F77 and FLIBS lines I get lots of complaints about:
> … error: unsupported directive '.stabs’
> that some from using the old version of gfortran that still exists in /usr/local/bin
> With them the gfortran runs nicely, but the first occurrence of a C routine produces
> the error detailed below. Obviously, there is something fishy with my setup, but
> I thought that fresh R and the two tools packages should have all fitted together.
> Thanks again for your suggestions.
>> On May 26, 2018, at 4:20 PM, Berend Hasselman <bhh using xs4all.nl> wrote:
>>> On 26 May 2018, at 15:17, Roger Koenker <rkoenker using illinois.edu> wrote:
>>> Thanks Berend that helps considerably, I added something for gfortran as follows:
>>> LDFLAGS =-L/usr/local/clang6/lib
>>> FLIBS=-L/usr/local/gfortran/lib -lgfortran
>>> and now the gfortran seems to be happy, but I’m still seeing problems with some C:
>>> /usr/local/clang6/bin/clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o
>>> In file included from init.c:1:
>>> /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:34:11: fatal error: 'string.h' file not
>>> # include <string.h> /* for memcpy, memset */
>>> 1 error generated.
>>> make: *** [init.o] Error 1
>>> ERROR: compilation failed for package ‘quantreg’
>>> presumably I’m still missing some LDFLGS for clang6?
>> LDFLAGS I presume?
>> I don't quite understand what is going wrong exactly.
>> Have you installed MacOs commandlinetools? I do have them installed.
>> See the first few lines of section C.3 in the R Administration and Installation manual.
>> And see item 2 and item 4 in the README.html in the gfortran-6.1-ElCapitan.dmg.
>> But you are defining too many lines in your Makevars.
>> I do not have F77 and FLIBS in mine. All taken care of by R's Makeconf (see /Library/Frameworks/R.framework/Versions/3.5/Resources/etc/Makeconf)
>> There is a symlink in /usr/local/bin/gfortran to the actual gfortran (the gfortran installer takes care of that).
>> I have run R CMD check on quantreg_5.35 and all is ok. No errors.
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