[R-SIG-Mac] R-SIG-Mac Digest, Vol 180, Issue 5
Ossenbruggen, Paul
Paul.Ossenbruggen at unh.edu
Thu Feb 15 15:18:45 CET 2018
Given David Winsemius’ reply, I obtained the following information:
PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname ".*" -ls
52645352 24 -rw-r--r-- 1 PJO staff 8196 Feb 9 13:20 /Users/PJO/Library/R/3.4/library/CF//.DS_Store
52645353 16 -rw-r--r-- 1 PJO staff 6148 Feb 9 13:20 /Users/PJO/Library/R/3.4/library/CF//extdata/.DS_Store
The following
PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname "CF.Rdata" -ls
PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname "CF.mb" -ls
PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname ".mb" -ls
return nothing or
PJO:SDE PJO$
I hope this information is of some use.
Thanks,
Paul
> On Feb 15, 2018, at 6:00 AM, r-sig-mac-request at r-project.org wrote:
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> Today's Topics:
>
> 1. R installation error caused by a bogus file. (Ossenbruggen, Paul)
> 2. Re: Update of RcppParallel failed (Marc Girondot)
> 3. Re: R installation error caused by a bogus file.
> (David Winsemius)
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 14 Feb 2018 15:01:46 +0000
> From: "Ossenbruggen, Paul" <Paul.Ossenbruggen at unh.edu>
> To: "r-sig-mac at r-project.org" <r-sig-mac at r-project.org>
> Subject: [R-SIG-Mac] R installation error caused by a bogus file.
> Message-ID: <0B742675-F1EB-4F2B-9F5D-F8587D399278 at unh.edu>
> Content-Type: text/plain; charset="utf-8"
>
> I receive the following error whenever I restart R and reload R onto my computer:
>
> Error: object 'CF.mb' not found
> [R.app GUI 1.70 (7463) x86_64-apple-darwin15.6.0]
>
> The object 'CF.mb’ file is a bogus file. In actually, it does not and should not exist and R should not attempting to load it.
>
> I suspect that I created it by mistake when I worked with RStudio in creating a R package called “CF”. Most likely I typed “CF.mb" instead of “CF.md.” The extension “.md” makes sense. It is extension for a Markdown file. “.mb” stands for some animation program extension, which I am not using.
>
> QUESTION: How do I stop R from looking for this object?
>
> Apparently, R has saved a call to the 'CF.mb’ file somewhere in its memory. My guess if I erase this call, I will be running R the way it is designed.
>
> Thanks,
>
> Paul
>
>
>
>
>
>
>
>
> ------------------------------
>
> Message: 2
> Date: Wed, 14 Feb 2018 16:11:11 +0100
> From: Marc Girondot <marc_grt at yahoo.fr>
> To: Keith O'Hara <keith.ohara at nyu.edu>, r-sig-mac R
> <r-sig-mac at r-project.org>
> Subject: Re: [R-SIG-Mac] Update of RcppParallel failed
> Message-ID: <14a19e19-d1aa-d189-961d-dc0f988dc9db at yahoo.fr>
> Content-Type: text/plain; charset="utf-8"; Format="flowed"
>
> Hi Keith,
>
> When I try just now, a new version of RcppParallel was available
> (4.3.20.2; previous one was 4.3.20.1):
>
> essai de l'URL 'https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org_src_contrib_RcppParallel-5F4.3.20.2.tar.gz&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=tR-Ab93uBbFJM8JTcIhOKJjwcpsCBojt9HslLckRpD0&e='
>
> And it compiles without problem !
>
> So the problem is solved !
>
> Thanks
>
> Marc
>
>
>
>
> Le 14/02/2018 à 14:58, Keith O'Hara a écrit :
>> This looks like an issue to bring up with the Rcpp guys, not R… but can you provide a full printout of the error? I’m guessing this failed when compiling a C file, not C++.
>>
>>
>>> On Feb 14, 2018, at 8:43 AM, Marc Girondot via R-SIG-Mac <r-sig-mac at r-project.org> wrote:
>>>
>>> This morning I had an update to apply for RcppParallel but it failed
>>>
>>> Here are some information:
>>>
>>>> update.packages()
>>> RcppParallel :
>>> Version 4.3.20 installed in /Library/Frameworks/R.framework/Versions/3.5/Resources/library
>>> Version 4.3.20.1 available at https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=Q1PNswfQSKGd9Ow-GalzQ1NXiyozpmVIw8u15cvI6vo&e=
>>> ....
>>> During instal, I had this error
>>>
>>> error: invalid argument '-std=gnu++11' not allowed with 'C'
>>>
>>> It failed with the two versions of clang that I have installed:
>>>
>>> clang++ --version
>>> clang version 5.0.1 (tags/RELEASE_501/final)
>>> Target: x86_64-apple-darwin17.4.0
>>> Thread model: posix
>>> InstalledDir: /usr/local/opt/llvm/bin
>>>
>>> or
>>>
>>> clang++ --version
>>> Apple LLVM version 9.0.0 (clang-900.0.39.2)
>>> Target: x86_64-apple-darwin17.4.0
>>> Thread model: posix
>>> InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
>>>
>>> Do you have some idea about what's happened and how to solve this problem ?
>>>
>>> Thanks
>>>
>>> Marc
>>>
>>> _________________
>>>
>>> Information on my R version:
>>>
>>>> R.Version()
>>> $platform
>>> [1] "x86_64-apple-darwin15.6.0"
>>>
>>> $arch
>>> [1] "x86_64"
>>>
>>> $os
>>> [1] "darwin15.6.0"
>>>
>>> $system
>>> [1] "x86_64, darwin15.6.0"
>>>
>>> $status
>>> [1] "Under development (unstable)"
>>>
>>> $major
>>> [1] "3"
>>>
>>> $minor
>>> [1] "5.0"
>>>
>>> $year
>>> [1] "2018"
>>>
>>> $month
>>> [1] "02"
>>>
>>> $day
>>> [1] "13"
>>>
>>> $`svn rev`
>>> [1] "74247"
>>>
>>> $language
>>> [1] "R"
>>>
>>> $version.string
>>> [1] "R Under development (unstable) (2018-02-13 r74247)"
>>>
>>> $nickname
>>> [1] "Unsuffered Consequences"
>>>
>>> _______________________________________________
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac at r-project.org
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>
>
>
>
> ------------------------------
>
> Message: 3
> Date: Wed, 14 Feb 2018 08:26:38 -0800
> From: David Winsemius <dwinsemius at comcast.net>
> To: "Ossenbruggen, Paul" <Paul.Ossenbruggen at unh.edu>
> Cc: "r-sig-mac at r-project.org" <r-sig-mac at r-project.org>
> Subject: Re: [R-SIG-Mac] R installation error caused by a bogus file.
> Message-ID: <F149708C-6939-4CC1-ACE0-D042E0FFB64C at comcast.net>
> Content-Type: text/plain; charset="utf-8"
>
>
>> On Feb 14, 2018, at 7:01 AM, Ossenbruggen, Paul <Paul.Ossenbruggen at unh.edu> wrote:
>>
>> I receive the following error whenever I restart R and reload R onto my computer:
>>
>> Error: object 'CF.mb' not found
>> [R.app GUI 1.70 (7463) x86_64-apple-darwin15.6.0]
>>
>> The object 'CF.mb’ file is a bogus file. In actually, it does not and should not exist and R should not attempting to load it.
>>
>> I suspect that I created it by mistake when I worked with RStudio in creating a R package called “CF”. Most likely I typed “CF.mb" instead of “CF.md.” The extension “.md” makes sense. It is extension for a Markdown file. “.mb” stands for some animation program extension, which I am not using.
>>
>> QUESTION: How do I stop R from looking for this object?
>>
>> Apparently, R has saved a call to the 'CF.mb’ file somewhere in its memory. My guess if I erase this call, I will be running R the way it is designed.
>>
>
> Have you deleted your `.Rdata` file? It's an invisible file and you may need to use Terminal.app to remove it from you startup directory. Where exactly that might be depends on how Rstudio is configured.
>
> --
> David Winsemius
> Alameda, CA, USA
>
> 'Any technology distinguishable from magic is insufficiently advanced.' -Gehm's Corollary to Clarke's Third Law
>
>
>
>
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> ------------------------------
>
> End of R-SIG-Mac Digest, Vol 180, Issue 5
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