[R-SIG-Mac] Fortran on MacOS Sierra

[Bob Rudis]

Glad you're up and running!

​If you have some specific examples I can try to reproduce (and report) as
I load the betas (I'm on beta 2 now).

-Bob

On Fri, Sep 30, 2016 at 8:26 AM, Ken Beath <ken at kjbeath.com.au> wrote:

> Thanks, yes I sorted it out. I’d read the bit on Makevars but it just
> didn’t seem what I wanted.
>
> There are some problems with the 10.12.1 beta which affect built libraries
> but at the moment I will just hope they go away.
>
> Ken
>
> > On 30 Sep. 2016, at 9:26 pm, Bob Rudis <bob at rud.is> wrote:
> >
> > Coudert's packages are unsigned which seems like a significant oversight
> and a CRAN manual entry recommending installing unsigned binaries does not
> sit well with me and may not work in the next macOS release.
> >
> > Ken: to avoid you having to dig you need to download <
> http://coudert.name/software/gfortran-6.1-ElCapitan.dmg> and install it,
> overriding the security warning (ugh).
> >
> > You then need to add this to your ~/.R/Makevars (or to the site one)
> >
> > F77 = /usr/local/gfortran/bin/gfortran
> > FC = /usr/local/gfortran/bin/gfortran
> > FLIBS = -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0
> -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm
> >
> > You'll still get the massive amount of warnings (they aren't harmful)
> but the pkg will compile/install from source.
> >
> >
> > On Fri, Sep 30, 2016 at 5:04 AM, Prof Brian Ripley <
> ripley at stats.ox.ac.uk> wrote:
> > This seems to be Sierra, which has 'tidied up' system libraries.
> >
> > The recommendation for El Capitan at http://coudert.name/software.html
> also works correctly on Sierra. (See the manual, preferably before posting.)
> >
> > There are good reasons why the posting guide asks for 'at a minimum' the
> output of sessionInfo() ....
> >
> > On 30/09/2016 09:31, Ken Beath wrote:
> > I tried to build frailtypack from source using R 3.3.1 and it failed
> with the following message (after a ridiculous amount of warnings)
> >
> > gfortran-4.8 -dynamiclib -Wl,-headerpad_max_install_names -undefined
> dynamic_lookup -single_module -multiply_defined suppress
> -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o
> frailtypack.so Adonnees.o AparamMultive.o Aparameters.o aGhermite.o
> aaOptim.o aaOptimres.o aaUseFunction.o aaUseFunctionG.o aamarq98o.o
> additive.o afuncpasres.o ahrmsym.o aresidusMartingale.o atestWald.o
> distance.o epoce.o epoce_log.o epoce_long.o frailtypack.o funcpaG_tps.o
> funcpaGcpm.o funcpaGcpm_intcens.o funcpaGcpm_log.o funcpaGsplines.o
> funcpaGsplines_intcens.o funcpaGsplines_log.o funcpaGweib.o
> funcpaGweib_intcens.o funcpaGweib_log.o funcpaMultivCpm.o
> funcpaMultivSplines.o funcpaMultivWeib.o funcpaacpm.o funcpaasplines.o
> funcpaaweib.o funcpaj_tps.o funcpajcpm.o funcpajcpm_log.o funcpajgeneral.o
> funcpajlongisplines.o funcpajlongiweib.o funcpajsplines.o
> funcpajsplines_fam.o funcpajsplines_intcens.o funcpajsplines_log.o
> funcpajweib.o funcpajweib_fam.o funcpajweib_intcens.o funcpajweib_log.o
> f... <truncated>
> > gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0
> > ld: library not found for -ldylib1.o
> > collect2: error: ld returned 1 exit status
> > make: *** [frailtypack.so] Error 1
> > ERROR: compilation failed for package ‘frailtypack’
> >
> > I was going to attempt the build with gfortran 4.2 but haven’t been able
> to revert back from 4.8
> >
> > So does it happen with 4.2 and if not, how can I revert back?
> >
> > If not is this an R problem or the package?
> >
> > --
> > Brian D. Ripley,                  ripley at stats.ox.ac.uk
> > Emeritus Professor of Applied Statistics, University of Oxford
> >
> > _______________________________________________
> > R-SIG-Mac mailing list
> > R-SIG-Mac at r-project.org
> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >
>
>

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