[R-SIG-Mac] R editor freezes after running a script

[Jose G Conde Santiago]

The problem persists, especially after working with R fro a long time.

I just got this message from the console after force quitting and reopening R:


> 2016-11-01 15:34:54.164 R[5977:86024] -[_CUIInternalLinkRendition setRuleThickness:]: unrecognized selector sent to instance 0x7f80f0562cc0
> 2016-11-01 15:34:54.166 R[5977:86024] *** RController: caught ObjC exception while processing system events. Update to the latest GUI version and consider reporting this properly (see FAQ) if it persists and is not known. 
> *** reason: -[_CUIInternalLinkRendition setRuleThickness:]: unrecognized selector sent to instance 0x7f80f0562cc0
> *** name: NSInvalidArgumentException, info: (null)
> *** Version: R 3.3.1 (70800) R.app R 3.3.1 GUI 1.68 Mavericks build
> Consider saving your work soon in case this develops into a problem.


 José

José G. Conde, MD, MPH
Catedrático, Escuela de Medicina
Director, CentIT2
Recinto de Ciencias Médicas, UPR

Tel  (787) 763-9401  Fax (787) 758-5206

Correo electrónico: jose.conde1 at upr.edu

URL: http://rcmi.rcm.upr.edu

> On Oct 20, 2016, at 2:37 PM, Jose G Conde Santiago <jose.conde1 at upr.edu> wrote:
> 
> I tried to replicate the crash by using R without R Commander, and I could not. I tried again with R and R Commander, and now I cannot replicate the crash either.
> 
> I was running an antivirus program (Avast) when the issue came out, which I uninstalled yesterday. This is the only change in my setup that might explain the original issue, though I am not sure. 
> 
> Thanks.
> 
> José
> 
> José G. Conde, MD, MPH
> Catedrático, Escuela de Medicina
> Director, CentIT2
> Recinto de Ciencias Médicas, UPR
> 
> Tel  (787) 763-9401  Fax (787) 758-5206
> 
> Correo electrónico: jose.conde1 at upr.edu
> 
> URL: http://rcmi.rcm.upr.edu
> 
>> On Oct 19, 2016, at 4:33 PM, Jose G Conde Santiago <jose.conde1 at upr.edu> wrote:
>> 
>> Correction:
>> 
>> I *** do not *** see this  behavior when running R from RStudio (0.99.903) plus R Commander and using the RStudio console to run the scripts.
>> 
>> José
>> 
>> 
>> José G. Conde, MD, MPH
>> Catedrático, Escuela de Medicina
>> Director, CentIT2
>> Recinto de Ciencias Médicas, UPR
>> 
>> Tel  (787) 763-9401  Fax (787) 758-5206
>> 
>> Correo electrónico: jose.conde1 at upr.edu
>> 
>> URL: http://rcmi.rcm.upr.edu
>> 
>>> On Oct 19, 2016, at 4:18 PM, Jose G Conde Santiago <jose.conde1 at upr.edu> wrote:
>>> 
>>> Hello.
>>> 
>>> I am running R (3.3.1) with R Commander (2.3-0) and XQuartz (2.7.9) on an iMac (late 2012) with Sierra. RAM is 32 GB. The file I am working with has about 350,000 records and 200 variables.
>>> 
>>> After running a script from the R console (using either the GLM or epiR libraries) the editor freezes when I try to open a new script, and I get the spinning beach ball. When the editor freezes, I still have at least 20 GB of free RAM. The only way out is to force quit R.
>>> 
>>> The epiR script repeats a series of calculations for a group of about 30 2 x 2 tables (epi2by2). The GLIM script runs Poisson regression with robust variance estimation. Both scripts run smoothly.
>>> 
>>> I do see this behavior when running R from RStudio (0.99.903) plus R Commander and using the RStudio console to run the scripts.
>>> 
>>> The issue does not disappear when I reinstall R. 
>>> 
>>> Thanks.
>>> 
>>> José
>>> 
>>> José G. Conde, MD, MPH
>>> Catedrático, Escuela de Medicina
>>> Director, CentIT2
>>> Recinto de Ciencias Médicas, UPR
>>> 
>>> Tel  (787) 763-9401  Fax (787) 758-5206
>>> 
>>> Correo electrónico: jose.conde1 at upr.edu
>>> 
>>> URL: http://rcmi.rcm.upr.edu
>>> 
>> 
>