[R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not. (Duncan Murdoch)
Duncan Murdoch
murdoch.duncan at gmail.com
Sat Jan 2 19:34:26 CET 2016
On 02/01/2016 12:47 PM, Joseph Kunkel wrote:
> Duncan, The rgl (binary) download says it, ver 0.95.1201, is as up to date as binaries are for my MacBook Pro retina early 2013 with OS X El Capitan w. 16 GB ram.
That version is just over a year old. We are getting closer to tracking
down the problem with newer ones that has prevented them from being
distributed as binaries on OSX, so you will likely find at some point
that an "update.packages()" call causes you to jump ahead a lot of
versions. You can read the change list here:
https://r-forge.r-project.org/scm/viewvc.php/pkg/rgl/inst/NEWS?view=markup&root=rgl
(This goes a little newer than the CRAN version.)
Duncan Murdoch
> Thanks for the quick view of the error codes.
>
> Joe Kunkel
>
>> On Jan 2, 2016, at 11:47 AM, Duncan Murdoch <murdoch.duncan at gmail.com> wrote:
>>
>> On 02/01/2016 10:23 AM, Joseph Kunkel wrote:
>>> What is the recomendation about upgrading to R 3.2.3 for someone who is now working on a project that is highly invested in using rgl? I am a bit reluctant to fall far behind in upgrades but using the MacGUI and R 3.2.2 is working reasonably well for me.
>>
>> You didn't say what version of rgl you're using.
>>
>>> I have gotten some error complaints during/after rgl use which might be an indication that I should upgrade?
>>>
>>> Error 1 in MacGUI window:
>>>
>>> 2016-01-01 21:52:05.063 R[2942:183303] -deltaZ is deprecated for NSEventTypeMagnify. Please use -magnification.
>>
>> I don't think this is present in the current rgl. I don't remember if it was there in earlier versions, but your verbose error message doesn't show any rgl activity as far as I can see.
>>
>> Duncan Murdoch
>>
>>>
>>> Verbose error 2 in MacGUI window:
>>>
>>> 2016-01-01 21:33:36.342 R[2942:183303] -[GLView delegate]: unrecognized selector sent to instance 0x7f9690b73a70
>>> 2016-01-01 21:33:36.342 R[2942:183303] An uncaught exception was raised
>>> 2016-01-01 21:33:36.343 R[2942:183303] -[GLView delegate]: unrecognized selector sent to instance 0x7f9690b73a70
>>> 2016-01-01 21:33:36.349 R[2942:183303] (
>>> 0 CoreFoundation 0x00007fff92e77ae2 __exceptionPreprocess + 178
>>> 1 libobjc.A.dylib 0x00007fff91c7d73c objc_exception_throw + 48
>>> 2 CoreFoundation 0x00007fff92e7ab9d -[NSObject(NSObject) doesNotRecognizeSelector:] + 205
>>> 3 CoreFoundation 0x00007fff92db3601 ___forwarding___ + 1009
>>> 4 CoreFoundation 0x00007fff92db3188 _CF_forwarding_prep_0 + 120
>>> 5 R 0x000000010f78f1aa -[RController validateMenuItem:] + 1002
>>> 6 AppKit 0x00007fff8c9a66f6 -[NSMenu _enableItem:] + 706
>>> 7 AppKit 0x00007fff8c9b8152 -[NSCarbonMenuImpl _carbonUpdateStatusEvent:handlerCallRef:] + 517
>>> 8 AppKit 0x00007fff8c9aaea1 NSSLMMenuEventHandler + 708
>>> 9 HIToolbox 0x00007fff9456b7be _ZL23DispatchEventToHandlersP14EventTargetRecP14OpaqueEventRefP14HandlerCallRec + 1231
>>> 10 HIToolbox 0x00007fff9456ac48 _ZL30SendEventToEventTargetInternalP14OpaqueEventRefP20OpaqueEventTargetRefP14HandlerCallRec + 404
>>> 11 HIToolbox 0x00007fff945809e6 SendEventToEventTarget + 40
>>> 12 HIToolbox 0x00007fff945ca99a _ZL18SendHICommandEventjPK9HICommandjjhPKvP20OpaqueEventTargetRefS5_PP14OpaqueEventRef + 411
>>> 13 HIToolbox 0x00007fff945dcc2f UpdateHICommandStatusWithCachedEvent + 47
>>> 14 HIToolbox 0x00007fff94566deb _ZN13HIApplication12EventHandlerEP25OpaqueEventHandlerCallRefP14OpaqueEventRefPv + 2787
>>> 15 HIToolbox 0x00007fff9456b7be _ZL23DispatchEventToHandlersP14EventTargetRecP14OpaqueEventRefP14HandlerCallRec + 1231
>>> 16 HIToolbox 0x00007fff9456ac48 _ZL30SendEventToEventTargetInternalP14OpaqueEventRefP20OpaqueEventTargetRefP14HandlerCallRec + 404
>>> 17 HIToolbox 0x00007fff945809e6 SendEventToEventTarget + 40
>>> 18 HIToolbox 0x00007fff945dc852 _ZL15SendMenuOpeningP14MenuSelectDataP8MenuDatadjjP14__CFDictionaryhPh + 716
>>> 19 HIToolbox 0x00007fff945f6d24 _ZL11DrawTheMenuP14MenuSelectDataPP9__CFArrayhPh + 280
>>> 20 HIToolbox 0x00007fff945f6a21 _ZL11MenuChangedP14MenuSelectDatahh + 316
>>> 21 HIToolbox 0x00007fff94711207 _ZL15TrackMenuCommonR14MenuSelectDataPhP13SelectionDataP10MenuResultS5_ + 1175
>>> 22 HIToolbox 0x00007fff945f64fa _ZL14MenuSelectCoreP8MenuData5PointdjPP13OpaqueMenuRefPt + 555
>>> 23 HIToolbox 0x00007fff945f6230 _HandleMenuSelection2 + 460
>>> 24 AppKit 0x00007fff8c8d575e _NSHandleCarbonMenuEvent + 277
>>> 25 AppKit 0x00007fff8c815435 _DPSNextEvent + 1906
>>> 26 AppKit 0x00007fff8cbe1943 -[NSApplication _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 454
>>> 27 R 0x000000010f79031c -[RController doProcessEvents:] + 204
>>> 28 R 0x000000010f78a72a -[RController handleReadConsole:] + 186
>>> 29 R 0x000000010f793f99 Re_ReadConsole + 185
>>> 30 libR.dylib 0x000000010f9c071f R_ReplDLLdo1 + 143
>>> 31 R 0x000000010f7a2367 run_REngineRmainloop + 295
>>> 32 R 0x000000010f79673a -[REngine runREPL] + 138
>>> 33 R 0x000000010f78574f main + 815
>>> 34 libdyld.dylib 0x00007fff8e5e65ad start + 1
>>> 35 ??? 0x0000000000000001 0x0 + 1
>>> )
>>>
>>> The prior error did not seem to affect the visual output of rgl but is troublesome.
>>>
>>> Joe Kunkel
>>>
>>>
>>>
>>> -·. .· ·. .><((((º>·. .· ·. .><((((º>·. .· ·. .><((((º> .··.· >=- =º}}}}}><
>>> Joseph G. Kunkel, Emeritus Professor
>>> Biology Department
>>> UMass Amherst
>>> Amherst MA 01003
>>> joe at bio.umass.edu
>>>
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>>
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