[R-SIG-Mac] RcppArmadillo errors

[Oskar Knapik]

Dear all

I am having some problems with your package.

It looks that I can't load it on my Mac computer (OS X El Capitan 10.11.6)

I got the following errors:
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
 can't load shared object
'/Users/oknapik/Library/R/3.3/library/RcppArmadillo/libs/RcppArmadillo.so':
  dlopen(/Users/oknapik/Library/R/3.3/library/RcppArmadillo/libs/RcppArmadillo.so, 6): Library not loaded: /Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libRlapack.dylib
  Referenced from: /Users/oknapik/Library/R/3.3/library/RcppArmadillo/libs/RcppArmadillo.so
  Reason: image not found

The newest OS X doesn't support X11 (I am not sure if you use it)

I am also trying to install the package on Microsoft R
https://mran.microsoft.com <https://mran.microsoft.com/>


Below the errors from the installation:

install.packages("RcppArmadillo", verbose=T)
Installing package into ‘/Users/oknapik/Library/R/3.3/library’
(as ‘lib’ is unspecified)
system (cmd0): /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL
trying URL 'https://mran.revolutionanalytics.com/snapshot/2016-07-01/src/contrib/RcppArmadillo_0.7.100.3.1.tar.gz <https://mran.revolutionanalytics.com/snapshot/2016-07-01/src/contrib/RcppArmadillo_0.7.100.3.1.tar.gz>'
Content type 'application/octet-stream' length 1055712 bytes (1.0 MB)
==================================================
downloaded 1.0 MB

foundpkgs: RcppArmadillo, /var/folders/mr/_t437jvd5v5fty4z3pypn_yc0000gn/T//RtmpPj3WB7/downloaded_packages/RcppArmadillo_0.7.100.3.1.tar.gz
files: /var/folders/mr/_t437jvd5v5fty4z3pypn_yc0000gn/T//RtmpPj3WB7/downloaded_packages/RcppArmadillo_0.7.100.3.1.tar.gz
Warning
In command 'doTryCatch(return(expr), name, parentenv, handler)':
  can't load the shared object  '/Library/Frameworks/R.framework/Resources/modules//R_X11.so':
  dlopen(/Library/Frameworks/R.framework/Resources/modules//R_X11.so, 6): Symbol not found: _CGBitmapContextCreate
  Referenced from: /Library/Frameworks/R.framework/Resources/modules//R_X11.so
  Expected in: flat namespace
 in /Library/Frameworks/R.framework/Resources/modules//R_X11.so
* installing *source* package ‘RcppArmadillo’ ...
** package ‘RcppArmadillo’ has been sucessuflly unpacked and  MD5 soms were checked
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking how to run the C++ preprocessor... clang++ -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether clang++ accepts -g... (cached) yes
checking whether g++ version is sufficient... checking LAPACK_LIBS... system LAPACK found
configure: creating ./config.status
config.status: creating inst/include/RcppArmadilloLapack.h
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/private/var/root/jenkins/workspace/External-R-3.3.1/vendor/build/include -DU_STATIC_IMPLEMENTATION -Wall -mtune=core2 -g -O2 -I/opt/X11/include -I"/Users/oknapik/Library/R/3.3/library/Rcpp/include"  -I../inst/include -fPIC  -I/private/var/root/jenkins/workspace/External-R-3.3.1/vendor/build/include -DU_STATIC_IMPLEMENTATIN -Wall -mtune=core2 -g -O2 -I/opt/X11/include -framework CoreFoundation -framework CoreGraphics -framework CoreText  -c RcppArmadillo.cpp -o RcppArmadillo.o
clang: warning: -framework CoreFoundation: 'linker' input unused
clang: warning: -framework CoreGraphics: 'linker' input unused
clang: warning: -framework CoreText: 'linker' input unused
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/private/var/root/jenkins/workspace/External-R-3.3.1/vendor/build/include -DU_STATIC_IMPLEMENTATION -Wall -mtune=core2 -g -O2 -I/opt/X11/include -I"/Users/oknapik/Library/R/3.3/library/Rcpp/include"  -I../inst/include -fPIC  -I/private/var/root/jenkins/workspace/External-R-3.3.1/vendor/build/include -DU_STATIC_IMPLEMENTATIN -Wall -mtune=core2 -g -O2 -I/opt/X11/include -framework CoreFoundation -framework CoreGraphics -framework CoreText  -c RcppExports.cpp -o RcppExports.o
clang: warning: -framework CoreFoundation: 'linker' input unused
clang: warning: -framework CoreGraphics: 'linker' input unused
clang: warning: -framework CoreText: 'linker' input unused
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/private/var/root/jenkins/workspace/External-R-3.3.1/vendor/build/include -DU_STATIC_IMPLEMENTATION -Wall -mtune=core2 -g -O2 -I/opt/X11/include -I"/Users/oknapik/Library/R/3.3/library/Rcpp/include"  -I../inst/include -fPIC  -I/private/var/root/jenkins/workspace/External-R-3.3.1/vendor/build/include -DU_STATIC_IMPLEMENTATIN -Wall -mtune=core2 -g -O2 -I/opt/X11/include -framework CoreFoundation -framework CoreGraphics -framework CoreText  -c fastLm.cpp -o fastLm.o
clang: warning: -framework CoreFoundation: 'linker' input unused
clang: warning: -framework CoreGraphics: 'linker' input unused
clang: warning: -framework CoreText: 'linker' input unused
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/private/var/root/jenkins/workspace/External-R-3.3.1/vendor/build/lib -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -framework Accelerate -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -L/usr/local/lib -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/private/var/root/jenkins/workspace/External-R-3.3.1/vendor/build/lib'
ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64'
ld: warning: directory not found for option '-L/usr/local/lib/x86_64'
ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [RcppArmadillo.so] Error 1
ERROR: compilation failed for package ‘RcppArmadillo’
* removing ‘/Users/oknapik/Library/R/3.3/library/RcppArmadillo’
* restoring previous ‘/Users/oknapik/Library/R/3.3/library/RcppArmadillo’
Warning in install.packages :
  installation of package ‘RcppArmadillo’ had non-zero exit status



I would be very grateful for help.

Best,
Oskar
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