[R-SIG-Mac] replace in the editor crash my machine.
Agustin Diez Castillo
agustin.diez at uv.es
Tue May 12 12:04:01 CEST 2015
Hi,
Very simple replacements like 5 by 6, in R.app editor, freeze my machine (only one of them) consistently.
Any ideas what is misconfigured in that particular machine?
sessionInfo()
R version 3.1.3 (2015-03-09)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
Running under: OS X 10.9.5 (Mavericks)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] scales_0.2.4 outliers_0.14 spatstat_1.41-1 foreign_0.8-63 plyr_1.8.1 rasterVis_0.35 data.table_1.9.4 Bchron_4.1.1 inline_0.3.14
[10] raster_2.3-40 rgeos_0.3-8 rgdal_0.9-2 sp_1.0-17 latticeExtra_0.6-26 RColorBrewer_1.1-2 lattice_0.20-31 ggplot2_1.0.1
loaded via a namespace (and not attached):
[1] abind_1.4-3 aspace_3.2 chron_2.3-45 coda_0.17-1 colorspace_1.2-6 deldir_0.1-9 digest_0.6.8 dismo_1.0-12 ellipse_0.3-8 goftest_1.0-2
[11] grid_3.1.3 gtable_0.1.2 hdrcde_3.1 hexbin_1.27.0 MASS_7.3-40 Matrix_1.2-0 mclust_5.0.0 mgcv_1.8-6 munsell_0.4.2 nlme_3.1-120
[21] polyclip_1.3-0 proto_0.3-10 Rcpp_0.11.5 reshape2_1.4.1 stringr_0.6.2 tensor_1.5 zoo_1.7-12
OS Report (initial part)
Date/Time: 2015-05-12 11:49:28 +0200
OS Version: 10.9.5 (Build 13F1077)
Architecture: x86_64
Report Version: 18
Command: R
Path: /Applications/R.app/Contents/MacOS/R
Version: R 3.1.3 GUI 1.65 Snow Leopard build (6912)
Parent: launchd [268]
PID: 35239
Event: hang
Duration: 4.20s
Steps: 42 (100ms sampling interval)
Hardware model: MacPro3,1
Active cpus: 8
Free pages: 3572843 pages (-2912)
Pageins: 0 pages
Pageouts: 0 pages
Swapins: 0 pages
Swapouts: 0 pages
Process: R [35239]
Path: /Applications/R.app/Contents/MacOS/R
Architecture: x86_64
Parent: launchd [268]
UID: 501
Task size: 839480 pages
CPU Time: 2.195s
Importance: Donating
IO Policy: Standard
Thread 0x97d71 DispatchQueue 1 priority 47 cpu time 2.192s
42 start + 52 (R) [0x1000014e4]
42 main + 913 (R) [0x100001881]
42 -[REngine runREPL] + 124 (R) [0x10001349c]
42 run_REngineRmainloop + 302 (R) [0x10001f26e]
42 R_ReplDLLdo1 + 141 (libR.dylib) [0x1001e9aed]
42 Re_ReadConsole + 190 (R) [0x10001277e]
42 -[RController handleReadConsole:] + 184 (R) [0x10000b7c8]
42 -[RController doProcessEvents:] + 204 (R) [0x100005abc]
42 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 122 (AppKit) [0x7fff841d389b]
42 _DPSNextEvent + 1434 (AppKit) [0x7fff841d424e]
42 _BlockUntilNextEventMatchingListInModeWithFilter + 65 (HIToolbox) [0x7fff89d135bc]
42 ReceiveNextEventCommon + 173 (HIToolbox) [0x7fff89d13685]
42 RunCurrentEventLoopInMode + 226 (HIToolbox) [0x7fff89d13a0d]
42 CFRunLoopRunSpecific + 309 (CoreFoundation) [0x7fff8a016e75]
42 __CFRunLoopRun + 776 (CoreFoundation) [0x7fff8a0173b8]
42 __CFRunLoopDoObservers + 391 (CoreFoundation) [0x7fff8a025cd7]
42 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23 (CoreFoundation) [0x7fff8a025d67]
42 __83-[NSWindow _postWindowNeedsDisplayOrLayoutOrUpdateConstraintsUnlessPostingDisabled]_block_invoke1331 + 46 (AppKit) [0x7fff84946061]
42 _handleWindowNeedsDisplayOrLayoutOrUpdateConstraints + 884 (AppKit) [0x7fff8437074e]
42 -[NSView displayIfNeeded] + 1680 (AppKit) [0x7fff8430b2da]
42 -[NSView _displayRectIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:] + 2828 (AppKit) [0x7fff8432be9f]
42 -[NSThemeFrame _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 314 (AppKit) [0x7fff8432eeb1]
42 -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 6151 (AppKit) [0x7fff84330bc4]
42 -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 6151 (AppKit) [0x7fff84330bc4]
42 -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 6151 (AppKit) [0x7fff84330bc4]
42 -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 841 (AppKit) [0x7fff8432f706]
42 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2787 (AppKit) [0x7fff84331ca0]
42 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 1799 (AppKit) [0x7fff843318c4]
42 -[NSTextView _drawRect:clip:] + 2452 (AppKit) [0x7fff84455db5]
42 -[RScriptEditorTextView drawRect:] + 447 (R) [0x1000531bf]
42 -[RTextView drawRect:] + 579 (R) [0x100044a33]
42 -[NSTextView drawRect:] + 1558 (AppKit) [0x7fff843b0719]
42 -[NSLayoutManager(NSPrivate) _glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] + 875 (AppKit) [0x7fff8439bcb4]
42 -[NSLayoutManager(NSPrivate) _firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] + 1393 (AppKit) [0x7fff8439d009]
42 _NSFastFillAllLayoutHolesForGlyphRange + 1435 (AppKit) [0x7fff843538d9]
42 -[NSLayoutManager(NSPrivate) _fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 4129 (AppKit) [0x7fff842aad30]
42 -[NSATSTypesetter layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:nextGlyphIndex:] + 1151 (AppKit) [0x7fff8429afac]
42 -[NSTypesetter layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:nextGlyphIndex:] + 108 (AppKit) [0x7fff8429b0a8]
42 -[NSTypesetter _layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:] + 510 (AppKit) [0x7fff84925008]
42 -[NSLayoutManager textContainerForGlyphAtIndex:effectiveRange:] + 534 (AppKit) [0x7fff842a84d5]
42 -[NSLayoutManager(NSPrivate) _invalidateDisplayIfNeeded] + 72 (AppKit) [0x7fff842b2105]
42 -[NSLayoutManager invalidateDisplayForCharacterRange:] + 431 (AppKit) [0x7fff8429d62f]
42 -[NSLayoutManager _primitiveInvalidateDisplayForGlyphRange:] + 3044 (AppKit) [0x7fff8429e72a]
42 -[NSTextView textContainerOrigin] + 342 (AppKit) [0x7fff84399506]
42 -[NSLayoutManager usedRectForTextContainer:] + 122 (AppKit) [0x7fff842b21b7]
42 -[NSLayoutManager(NSPrivate) _validatedStoredUsageForTextContainerAtIndex:] + 82 (AppKit) [0x7fff842b2233]
42 -[NSLayoutManager(NSPrivate) _recalculateUsageForTextContainerAtIndex:] + 919 (AppKit) [0x7fff842a6b19]
42 -[NSATSTypesetter layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:nextGlyphIndex:] + 816 (AppKit) [0x7fff8429ae5d]
42 -[NSATSTypesetter layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:nextGlyphIndex:] + 1151 (AppKit) [0x7fff8429afac]
42 -[NSTypesetter layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:nextGlyphIndex:] + 108 (AppKit) [0x7fff8429b0a8]
42 -[NSTypesetter _layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:] + 1462 (AppKit) [0x7fff849253c0]
42 ??? (R + 18446744069414584320) [0]
42 _sigtramp + 26 (libsystem_platform.dylib) [0x7fff8ef0e5aa]
42 sigactionSegv + 781 (libR.dylib) [0x1001e8c3d]
42 Re_ReadConsole + 190 (R) [0x10001277e]
42 -[RController handleReadConsole:] + 184 (R) [0x10000b7c8]
42 -[RController doProcessEvents:] + 229 (R) [0x100005ad5]
42 -[NSApplication sendEvent:] + 2021 (AppKit) [0x7fff843775d4]
42 -[NSWindow sendEvent:] + 11296 (AppKit) [0x7fff843d8a58]
42 -[NSControl mouseDown:] + 706 (AppKit) [0x7fff8445713d]
42 -[NSButtonCell trackMouse:inRect:ofView:untilMouseUp:] + 487 (AppKit) [0x7fff84457a27]
42 -[NSCell trackMouse:inRect:ofView:untilMouseUp:] + 2316 (AppKit) [0x7fff84458655]
42 -[NSCell _sendActionFrom:] + 128 (AppKit) [0x7fff8443ec4d]
42 -[NSControl sendAction:to:] + 86 (AppKit) [0x7fff843f20de]
42 -[NSApplication sendAction:to:from:] + 327 (AppKit) [0x7fff843f2260]
42 -[NSApplication sendAction:to:from:] + 327 (AppKit) [0x7fff843f2260]
42 -[_NSTextFinderImpl _performAction:] + 364 (AppKit) [0x7fff84391031]
42 -[_NSTextFinderImpl replaceAllInSelectionOnly:completionHandler:] + 2239 (AppKit) [0x7fff846b2bba]
42 -[NSTextView(NSSharing) didChangeText] + 213 (AppKit) [0x7fff84431130]
42 -[NSLayoutManager textContainerForGlyphAtIndex:effectiveRange:] + 235 (AppKit) [0x7fff842a83aa]
42 _NSFastFillAllLayoutHolesForGlyphRange + 1435 (AppKit) [0x7fff843538d9]
42 -[NSLayoutManager(NSPrivate) _fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1306 (AppKit) [0x7fff842aa229]
42 -[NSATSTypesetter layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] + 823 (AppKit) [0x7fff842aba75]
42 -[NSATSTypesetter layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] + 1107 (AppKit) [0x7fff842abb91]
42 -[NSTypesetter layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:] + 202 (AppKit) [0x7fff842abcad]
42 -[NSTypesetter _layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:] + 3904 (AppKit) [0x7fff84925d4a]
42 -[NSTypesetter _getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:] + 1197 (AppKit) [0x7fff842ac1c1]
42 ??? (R + 18446744069414584320) [0]
*42 hndl_alltraps + 219 (mach_kernel) [0xffffff80002f438b]
*38 user_trap + 864 (mach_kernel) [0xffffff80002dd0d0]
*38 exception_triage + 160 (mach_kernel) [0xffffff8000224230]
*37 exception_deliver + 758 (mach_kernel) [0xffffff80002240b6]
*35 mach_exception_raise + 158 (mach_kernel) [0xffffff800025d68e]
*29 mach_msg_rpc_from_kernel_body + 252 (mach_kernel) [0xffffff800022725c]
*29 ipc_mqueue_receive + 66 (mach_kernel) [0xffffff80002169e2]
*19 thread_block_reason + 204 (mach_kernel) [0xffffff800023608c]
*19 ??? (mach_kernel + 224459) [0xffffff8000236ccb]
*19 machine_switch_context + 354 (mach_kernel) [0xffffff80002d8ab2]
*10 thread_block_reason + 256 (mach_kernel) [0xffffff80002360c0]
*10 ml_set_interrupts_enabled + 27 (mach_kernel) [0xffffff80002d717b]
*5 mach_msg_rpc_from_kernel_body + 181 (mach_kernel) [0xffffff8000227215]
*3 ipc_kmsg_send + 669 (mach_kernel) [0xffffff8000213d1d]
*3 ipc_mqueue_send + 100 (mach_kernel) [0xffffff80002164f4]
*3 ipc_mqueue_post + 404 (mach_kernel) [0xffffff80002167d4]
*3 ml_set_interrupts_enabled + 27 (mach_kernel) [0xffffff80002d717b]
*1 ipc_kmsg_send + 60 (mach_kernel) [0xffffff8000213abc]
*1 usimple_lock + 194 (mach_kernel) [0xffffff80002d5392]
*1 ipc_kmsg_send + 513 (mach_kernel) [0xffffff8000213c81]
*1 ml_set_interrupts_enabled + 14 (mach_kernel) [0xffffff80002d716e]
*1 mach_msg_rpc_from_kernel_body + 463 (mach_kernel) [0xffffff800022732f]
*1 memcpy + 8 (mach_kernel) [0xffffff800010e058]
*1 mach_exception_raise + 41 (mach_kernel) [0xffffff800025d619]
*1 exception_deliver + 535 (mach_kernel) [0xffffff8000223fd7]
*1 retrieve_task_self_fast + 28 (mach_kernel) [0xffffff8000228c7c]
*1 lck_mtx_lock + 69 (mach_kernel) [0xffffff80002d1ca5]
*2 user_trap + 157 (mach_kernel) [0xffffff80002dce0d]
*2 user_trap + 748 (mach_kernel) [0xffffff80002dd05c]
*2 vm_fault + 440 (mach_kernel) [0xffffff8000278668]
*2 vm_map_lookup_locked + 240 (mach_kernel) [0xffffff8000287a70]
*1 vm_map_store_lookup_entry_rb + 75 (mach_kernel) [0xffffff800028dc5b]
*1 vm_map_store_lookup_entry_rb + 48 (mach_kernel) [0xffffff800028dc40]
Thread 0x97d80 DispatchQueue 2 priority 49
42 _dispatch_mgr_thread + 52 (libdispatch.dylib) [0x7fff86088136]
42 kevent64 + 10 (libsystem_kernel.dylib) [0x7fff8c7c1662]
*42 ??? (mach_kernel + 3963520) [0xffffff80005c7a80]
Thread 0x97dab priority 47
42 thread_start + 13 (libsystem_pthread.dylib) [0x7fff90fcffc9]
42 _pthread_start + 137 (libsystem_pthread.dylib) [0x7fff90fcb72a]
42 _pthread_body + 138 (libsystem_pthread.dylib) [0x7fff90fcb899]
42 __NSThread__main__ + 1318 (Foundation) [0x7fff86e6ed8b]
42 __select + 10 (libsystem_kernel.dylib) [0x7fff8c7c09aa]
*42 ??? (mach_kernel + 4083744) [0xffffff80005e5020]
Thread 0x97dcc priority 47
42 thread_start + 13 (libsystem_pthread.dylib) [0x7fff90fcffc9]
42 _pthread_start + 137 (libsystem_pthread.dylib) [0x7fff90fcb72a]
42 _pthread_body + 138 (libsystem_pthread.dylib) [0x7fff90fcb899]
42 _NSEventThread + 144 (AppKit) [0x7fff8437405e]
42 CFRunLoopRunSpecific + 309 (CoreFoundation) [0x7fff8a016e75]
42 __CFRunLoopRun + 1161 (CoreFoundation) [0x7fff8a017539]
42 __CFRunLoopServiceMachPort + 181 (CoreFoundation) [0x7fff8a017f15]
42 mach_msg_trap + 10 (libsystem_kernel.dylib) [0x7fff8c7bca1a]
*42 ipc_mqueue_receive_continue + 0 (mach_kernel) [0xffffff8000216900]
Thread 0x9ab54 priority 47 cpu time 0.003s
42 thread_start + 13 (libsystem_pthread.dylib) [0x7fff90fcffc9]
42 _pthread_start + 137 (libsystem_pthread.dylib) [0x7fff90fcb72a]
42 _pthread_body + 138 (libsystem_pthread.dylib) [0x7fff90fcb899]
42 __NSThread__main__ + 1318 (Foundation) [0x7fff86e6ed8b]
42 -[NSUIHeartBeat _heartBeatThread:] + 2132 (AppKit) [0x7fff8443817d]
42 usleep + 54 (libsystem_c.dylib) [0x7fff91050cb2]
42 __semwait_signal + 10 (libsystem_kernel.dylib) [0x7fff8c7c0a3a]
*42 semaphore_wait_continue + 0 (mach_kernel) [0xffffff800023b8e0]
Thread 0x9af9f priority 47
42 start_wqthread + 13 (libsystem_pthread.dylib) [0x7fff90fcffb9]
42 __workq_kernreturn + 10 (libsystem_kernel.dylib) [0x7fff8c7c0e6a]
*42 wq_unpark_continue + 0 (pthread) [0xffffff7f80bf06ae]
Binary Images:
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0x100117000 - 0x1003a9ff7 libR.dylib (3.1.3) <49269B60-B96B-3DC1-B4AA-B88017AA995A> /Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib
0x7fff841b0000 - 0x7fff84d26ff7 com.apple.AppKit 6.9 (1265.21) <9DC13B27-841D-3839-93B2-3EDE66157BDE> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x7fff86085000 - 0x7fff8609ffff libdispatch.dylib (339.92.1) <C4E4A18D-3C3B-3C9C-8709-A4270D998DE7> /usr/lib/system/libdispatch.dylib
0x7fff86e08000 - 0x7fff87108ff7 com.apple.Foundation 6.9 (1056.17) <E0B0FAF6-5CA8-3EEB-8BF2-104C0AEEF925> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x7fff89ce5000 - 0x7fff89f8fff5 com.apple.HIToolbox 2.1.1 <A388E773-AE7B-3FD1-8662-A98E6E24EA16> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x7fff89fa7000 - 0x7fff8a18cfff com.apple.CoreFoundation 6.9 (855.17) <729BD6DA-1F63-3E72-A148-26F21EBF52BB> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff8c7ab000 - 0x7fff8c7c7ff7 libsystem_kernel.dylib (2422.115.14) <8116098D-B3F1-3E50-A934-576DD6369234> /usr/lib/system/libsystem_kernel.dylib
0x7fff8ef0b000 - 0x7fff8ef11ff7 libsystem_platform.dylib (24.90.1) <3C3D3DA8-32B9-3243-98EC-D89B9A1670B3> /usr/lib/system/libsystem_platform.dylib
0x7fff90fca000 - 0x7fff90fd1ff7 libsystem_pthread.dylib (53.1.4) <AB498556-B555-310E-9041-F67EC9E00E2C> /usr/lib/system/libsystem_pthread.dylib
0x7fff90fd5000 - 0x7fff9105eff7 libsystem_c.dylib (997.90.3) <6FD3A400-4BB2-3B95-B90C-BE6E9D0D78FA> /usr/lib/system/libsystem_c.dylib
*0xffffff7f80bed000 - 0xffffff7f80bf4fff com.apple.kec.pthread 1.0 (1) <882075E6-12C4-3225-8750-928715183739> /System/Library/Extensions/pthread.kext/Contents/MacOS/pthread
*0xffffff8000200000 - 0xffffff80007aa29a mach_kernel (2422.115.14) <8B1A8FD1-2344-36C0-A7F5-D9D485A995FA> /mach_kernel
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