[R-SIG-Mac] Problems to install a package

[Brandon Hurr]

On Wed, Jul 29, 2015 at 7:26 AM, David Winsemius <dwinsemius at comcast.net>
wrote:

>  install.packages("RMacoqui", repos="http://R-Forge.R-project.org",
> type="source", dependencies=TRUE)
>

I'm not sure if this is helpful, but I'm running 10.10.4 and had no issues
installing from the source as David posted.

>  install.packages("RMacoqui", repos="http://R-Forge.R-project.org",
type="source", dependencies=TRUE)
trying URL 'http://R-Forge.R-project.org/src/contrib/RMacoqui_1.0.tar.gz'
Content type 'application/x-gzip' length 43410 bytes (42 KB)
==================================================
downloaded 42 KB

* installing *source* package ‘RMacoqui’ ...
** libs
gfortran-4.8   -fPIC  -g -O2  -c RMacoqui.f -o RMacoqui.o
gfortran-4.8: warning: couldn’t understand kern.osversion ‘14.4.0
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress
-L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o
RMacoqui.so RMacoqui.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2
-lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R
-Wl,-framework -Wl,CoreFoundation
installing to
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RMacoqui/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Package RMACOQUI load
 (last revision July-2015)

RMacoqui develops a probability procedure for the identification of
chorotypes,
i.e. distribution patterns shared by a group of species, which can be
operatively
identified within an area (Baroni-Urbani et al., 1978).
This method was first published by Marquez et al. (1997),
based on  a prior proposal for detecting biogeographic boundaries (Real et
al., 1992),
and with a mathematic rationale derived from McCoy et al. (1986).
The method for chorotype identification was later enhanced by Munoz et al.
(2003)
and Real et al. (2008), and was updated and contextualized under a fuzzy
logic framework
by Olivero et al. (2011).
RMacoqui outputs  are also useful as the basis for delimiting biogeographic
regions
and transition zones with the support of the fuzzy logic (Olivero et al.
2013).


* DONE (RMacoqui)

The downloaded source packages are in
‘/private/var/folders/zg/hy0k4g312536_4l1qc1w27640000gn/T/RtmpXIzgzN/downloaded_packages’
> sessionInfo()
R version 3.2.1 (2015-06-18)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.10.4 (Yosemite)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] tools_3.2.1

	[[alternative HTML version deleted]]