[R-SIG-Mac] vegan failed to load under Mac OS X Mavericks

Pedro Gomes pagomes at bio.uminho.pt
Thu Jan 8 14:24:12 CET 2015

Problem solved after re-installation of X-Quartz. It seems some libraries were missing after the last update (I don’t know if its R fault or Yosemite operating system update)

thanks anyway



> On 08/01/2015, at 11:54, Jari Oksanen <jari.oksanen at oulu.fi> wrote:
> Howdy,
> This is not a vegan issue: see this mailing list about the problems other people had with tcltk (tcltk is the key issue).
> Next version of vegan can be loaded without tcltk and there should be patched versions of R-for-Mac that do not suffer with this problem. The next version of vegan can be obtained from http://r-forge.r-project.og/, <http://r-forge.r-project.og/,> but it no longer provides Mac binaries. For patched versions of R, see other messages in this mailing list.
> Cheers, Jari Oksanen
> From: R-SIG-Mac <r-sig-mac-bounces at r-project.org <mailto:r-sig-mac-bounces at r-project.org>> on behalf of Pedro Gomes <pagomes at bio.uminho.pt <mailto:pagomes at bio.uminho.pt>>
> Sent: 18 December 2014 23:52
> To: r-sig-mac at r-project.org <mailto:r-sig-mac at r-project.org>
> Subject: [R-SIG-Mac] vegan failed to load under Mac OS X Mavericks
> Hi
> When trying to load Vegan in R 3.1.2 under under Mac OS X Mavericks I get the following error. Any idea why?
> "starting httpd help server ... done
> Error : .onLoad failed in loadNamespace() for 'tcltk', details:
>   call: dyn.load(file, DLLpath = DLLpath, ...)
>   error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.1/Resources/library/tcltk/libs/tcltk.so':
>   dlopen(/Library/Frameworks/R.framework/Versions/3.1/Resources/library/tcltk/libs/tcltk.so, 10): Library not loaded: /usr/X11/lib/libXft.2.dylib
>   Referenced from: /usr/local/lib/libtk8.6.dylib
>   Reason: image not found
> In addition: Warning message:
> running command ''otool' -L '/Library/Frameworks/R.framework/Resources/library/tcltk/libs//tcltk.so'' had status 69 
> Error: package or namespace load failed for ‘vegan’
> Agreeing to the Xcode/iOS license requires admin privileges, please re-run as root via sudo."
> regards
> Pedro Gomes
> <image001.jpg><image001.png>
> CBMA - Molecular and Environmental Biology Centre
> Biology Department
> Minho University
> Campus de Gualtar
> 4710-074 Braga
> Phone: 351-253 604040
> Fax: 351-253 678980
> e-mail: pagomes at bio.uminho.pt <mailto:clucas at bio.uminho.pt>

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