[R-SIG-Mac] R Freezes while Document editing

Holly Beale hbeale at maverixbio.com
Sun Feb 8 23:17:57 CET 2015


I have the same problem. I get convertPointFromBase when I start and at 
various other times; I also frequently get segfault errors and have to 
force close the app.

R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet"
Platform: x86_64-apple-darwin13.4.0 (64-bit)
[R.app GUI 1.65 (6833) x86_64-apple-darwin13.4.0]


On Thursday, December 4, 2014 at 9:14:48 PM UTC-8, John Magnotti wrote:
>
> If it helps, a colleague of mine and I also get the freezing + segfaults a 
> few times a day. They also occur while typing into the code editor in 
> R.app 
> [both of us are using R version 3.1.2 (2014-10-31); Platform: 
> x86_64-apple-darwin13.4.0 (64-bit) ]. 
>
> They seem to be more frequent while trying to use command+z (undo) several 
> times in a row. Maybe some thread is scanning/parsing the file after each 
> change and it can't keep up with rapid undo? 
>
>
> John 
>
> On Thu, Dec 4, 2014 at 10:43 PM, Boris Steipe <boris.... at utoronto.ca 
> <javascript:>> 
> wrote: 
>
> > Ah - sorry if this was unclear: 
> > I don't know if the warning is related to the segfault. I just started 
> > noticing both at about the same time. 
> > When the segfault occurs, R is frozen. The console displays an options 
> > dialogue for shutting it down, but accepts no input. 
> > 
> > With several more freezes today a pattern seems to emerge: once I have 
> > edited for a while, the freeze happens when I select a part of a line of 
> > code. 
> > 
> > 
> > B. 
> > 
> > On Dec 4, 2014, at 5:06 PM, peter dalgaard <pda... at gmail.com 
> <javascript:>> wrote: 
> > 
> > >> 
> > >> On 04 Dec 2014, at 21:16 , Boris Steipe <boris.... at utoronto.ca 
> <javascript:>> 
> > wrote: 
> > >> 
> > >> For a couple of days I have been seeing a (system generated) warning 
> > after I open a document, when I change focus into that document: 
> > >> 2014-12-04 15:05:21.336 R[73463:707] *** 
> > >> WARNING: Method convertPointFromBase: in class NSView is deprecated 
> on 
> > 10.7 
> > >> and later. It should not be used in new applications. 
> > >> 
> > >> This occurs also if the document is empty, however not with a 
> document 
> > that has been freshly created in a new session. 
> > >> 
> > >> As well, I have experienced freezes (application not responding) 
> right 
> > after R displays the segfault message, while 
> > >> editing the script file. The freezes are intermittent, after about an 
> > hour of coding or so - I can't reproduce them 
> > >> yet. 
> > >> 
> > >> Updating to 3.1.2 has solved neither of the problems. 
> > >> 
> > >> Is this a known problem? Is there anything I can contribute to get it 
> > solved? 
> > >> Thanks! 
> > >> Boris 
> > > 
> > > It's a warning. A programming paradigm used in older versions of OS X 
> > fell from favor in version 10.7. We still maintain a Snow Leopard (i.e. 
> OS 
> > X 10.6) build. The question is whether the intended paradigm replacement 
> > actually works in 10.6; otherwise, it could be undesirable to maintain 
> two 
> > different codes for the two different builds. 
> > > 
> > > I don't see the warning as related to any segfault? Being able to 
> > continue work following a segfault would be quite unusual so I suspect 
> that 
> > you're using the term incorrectly. 
> > > 
> > > If you want to contribute, you might dig into the source code for 
> R.app 
> > and figure out what it is that needs to be replaced and by what. And 
> then 
> > whether the "what" is present in the Snow Leopard toolchain. The closest 
> I 
> > can get is stuff like this: 
> > > 
> > > http://oleb.net/blog/2011/08/whats-new-for-developers-in-lion-part-2/ 
> > > 
> > > Mind you, Simon might already know all about this and just needs to 
> get 
> > around to sorting things out. 
> > > 
> > > 
> > >> 
> > >> 
> > >> ----- 
> > >> Mac OS 10.9.5 
> > >> R version 3.1.2 (2014-10-31) 
> > >> Platform: x86_64-apple-darwin13.4.0 (64-bit) 
> > >> 
> > >> locale: 
> > >> [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8 
> > >> 
> > >> attached base packages: 
> > >> [1] stats     graphics  grDevices utils     datasets  methods   base 
> > >> _______________________________________________ 
> > >> R-SIG-Mac mailing list 
> > >> R-SI... at r-project.org <javascript:> 
> > >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac 
> > > 
> > > -- 
> > > Peter Dalgaard, Professor, 
> > > Center for Statistics, Copenhagen Business School 
> > > Solbjerg Plads 3, 2000 Frederiksberg, Denmark 
> > > Phone: (+45)38153501 
> > > Email: pd.... at cbs.dk <javascript:>  Priv: PDa... at gmail.com 
> <javascript:> 
> > 
> > _______________________________________________ 
> > R-SIG-Mac mailing list 
> > R-SI... at r-project.org <javascript:> 
> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac 
> > 
>
>         [[alternative HTML version deleted]] 
>
> _______________________________________________ 
> R-SIG-Mac mailing list 
> R-SI... at r-project.org <javascript:> 
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac 
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://stat.ethz.ch/pipermail/r-sig-mac/attachments/20150208/1a7009f6/attachment-0002.html>


More information about the R-SIG-Mac mailing list