[R-SIG-Mac] R.app crashing

[Ken Knoblauch]

Your suggestion of removing R.app and reinstalling 3.0.0 worked.
Thank you, very much.

I would have tried to install R.app directly from http://r.research.att.com
but the only versions listed are 2.15.x and 3.1.x.

best,

Ken


Quoting Prof Brian Ripley <ripley at stats.ox.ac.uk>:

> That log says
>
>   Library not loaded:
> /Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib
>
> '3.1' means R-devel, not 3.0.0 and not R-patched.
>
> I can confirm this from today's R-patched: it looks like the wrong
> version of R.app got bundled:
>
> tystie% otool -L /Applications/R.app/Contents/MacOS/R
> /Applications/R.app/Contents/MacOS/R:
> 	/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib
> (compatibility version 3.1.0, current version 3.1.0)
>
>
> However, reverting to 3.0.0 should work.  One issue (and did we not see
> a report from you about it?) is that the installer does not necessarily
> replace the copy of R.app in /Applications if it finds another one.
> (That has happened to me when the one I last used was a personal
> build.)  So I would remove all copies of R.app from your system and
> re-install 3.0.0.
>
>
>
> On 16/04/2013 09:28, Ken Knoblauch wrote:
>> Hi,
>>
>> I went to upgrade a working R 3.0.0 to the patched version and I'm
>> finding that
>> I can't open it.  I went back and downloaded the unpatched version and
>> find the same problem.  I can open R in the terminal, so sounds like
>> a problem with R.app.
>>
>> I'm on a Mac Air running OS 10.7.5.  From the terminal:
>>
>>  sessionInfo()
>> R version 3.0.0 (2013-04-03)
>> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>>
>> locale:
>> [1] fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> The crash log is the following:
>>
>> Process:         R [3611]
>> Path:            /Applications/R.app/Contents/MacOS/R
>> Identifier:      org.R-project.R
>> Version:         R 3.0.0 GUI 1.60 Snow Leopard build (6480)
>> Code Type:       X86-64 (Native)
>> Parent Process:  launchd [109]
>>
>> Date/Time:       2013-04-16 10:12:24.774 +0200
>> OS Version:      Mac OS X 10.7.5 (11G63b)
>> Report Version:  9
>>
>> Interval Since Last Report:          554272 sec
>> Crashes Since Last Report:           31
>> Per-App Crashes Since Last Report:   5
>> Anonymous UUID:                      938B8307-E22B-4402-A8AA-4E9401361605
>>
>> Crashed Thread:  0
>>
>> Exception Type:  EXC_BREAKPOINT (SIGTRAP)
>> Exception Codes: 0x0000000000000002, 0x0000000000000000
>>
>> Application Specific Information:
>> dyld: launch, loading dependent libraries
>>
>> Dyld Error Message:
>>   Library not loaded:
>> /Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib
>>   Referenced from: /Applications/R.app/Contents/MacOS/R
>>   Reason: image not found
>>
>> Binary Images:
>>        0x100000000 -        0x100098fef +org.R-project.R (R 3.0.0 GUI
>> 1.60 Snow Leopard build - 6480) <CF67A542-FD9A-3A86-B869-FB06FE012513>
>> /Applications/R.app/Contents/MacOS/R
>>     0x7fff65061000 -     0x7fff65095baf  dyld (195.6 - ???)
>> <0CD1B35B-A28F-32DA-B72E-452EAD609613> /usr/lib/dyld
>>
>> Model: MacBookAir4,1, BootROM MBA41.0077.B0F, 2 processors, Intel Core
>> i5, 1.6 GHz, 4 GB, SMC 1.74f4
>> Graphics: Intel HD Graphics 3000, Intel HD Graphics 3000, Built-In, 384 MB
>> Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE,
>> 0x4D34373142353737334448302D4348392020
>> Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE,
>> 0x4D34373142353737334448302D4348392020
>> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xE9),
>> Broadcom BCM43xx 1.0 (5.106.198.19.22)
>> Bluetooth: Version 4.0.8f17, 2 service, 11 devices, 1 incoming serial ports
>> Network Service: Ethernet, Ethernet, en0
>> Serial ATA Device: APPLE SSD TS128C, 121,33 GB
>> USB Device: FaceTime Camera (Built-in), apple_vendor_id, 0x850a,
>> 0xfa200000 / 3
>> USB Device: hub_device, 0x0424  (SMSC), 0x2513, 0xfa100000 / 2
>> USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id, 0x024a,
>> 0xfa120000 / 5
>> USB Device: BRCM20702 Hub, 0x0a5c  (Broadcom Corp.), 0x4500, 0xfa110000 / 4
>> USB Device: Bluetooth USB Host Controller, apple_vendor_id, 0x821f,
>> 0xfa113000 / 7
>> USB Device: hub_device, 0x0424  (SMSC), 0x2513, 0xfd100000 / 2
>>
>> Thanks.
>>
>> Ken
>>
>
>
> -- 
> Brian D. Ripley,                  ripley at stats.ox.ac.uk
> Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
> University of Oxford,             Tel:  +44 1865 272861 (self)
> 1 South Parks Road,                     +44 1865 272866 (PA)
> Oxford OX1 3TG, UK                Fax:  +44 1865 272595



-- 
Kenneth Knoblauch
Inserm U846
Stem-cell and Brain Research Institute
Department of Integrative Neurosciences
18 avenue du Doyen Lépine
69500 Bron
France
tel: +33 (0)4 72 91 34 77
fax: +33 (0)4 72 91 34 61
portable: +33 (0)6 84 10 64 10
http://www.sbri.fr/members/kenneth-knoblauch.html