[R-SIG-Mac] R 2.15.2, OS X 10.8.2, JGR
marc_schwartz at me.com
Sat Dec 29 01:35:15 CET 2012
Did you install the 1.7 JRE only, or did you also install the JDK?
If you did not also install the JDK, I believe that you need to do so. It is available here:
Install that and then run the full javareconf command as I had in my reply below.
On Dec 28, 2012, at 6:11 PM, Roy Mendelssohn - NOAA Federal <roy.mendelssohn at noaa.gov> wrote:
> Thanks. But I am still stuck. No matter which command I give, I get the following:
>> sudo R CMD javareconf
>> Java interpreter : /usr/bin/java
>> Java version : 1.6.0_29
>> Java home path : /Library/Java/JavaVirtualMachines/1.6.0_29-b11-402.jdk/Contents/Home
>> Java compiler : /usr/bin/javac
>> Java headers gen.: /usr/bin/javah
>> Java archive tool: /usr/bin/jar
>> Java library path:
>> JNI linker flags : -framework JavaVM
>> JNI cpp flags : -I$(JAVA_HOME)/include
> Note the Java home path. But when I do the following:
>> bash-$ which java
>> bash-$ java -version
>> java version "1.7.0_06"
>> Java(TM) SE Runtime Environment (build 1.7.0_06-b24)
>> Java HotSpot(TM) 64-Bit Server VM (build 23.2-b09, mixed mode)
> So where is ti getting that the home path is to /Library/Java/JavaVirtualMachines/1.6.0_29-b11-402.jdk/Contents/Home? Is there a file that I can hand edit to give R the correct values?
> -Roy M.
> On Dec 28, 2012, at 1:28 PM, Marc Schwartz <marc_schwartz at me.com> wro
>> On Dec 28, 2012, at 3:05 PM, peter dalgaard <pdalgd at gmail.com> wrote:
>>> On Dec 28, 2012, at 20:40 , Roy Mendelssohn - NOAA Federal wrote:
>>>> Hi All:
>>>> I recently upgraded my computer to 10.8.2, and my Java is now java 1.7 from Oracle. I am running R 2.15.2, and now rjava and JGR don't work because what appears to be a problem with ipot. I tried reinstalling rjava and got the following:
>>> I can't remember this kind of stuff form one occasion to the next either, but wouldn't it be something with "sudo R CMD javareconf" ?
>> For Mountain Lion, it should be:
>> sudo R CMD javareconf JAVA_CPPFLAGS=-I/System/Library/Frameworks/JavaVM.framework/Headers
>> Marc Schwartz
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