[R-SIG-Mac] R and Valgrind hangs on Snow Leopard

[Cule, Erika]

(Reposted in plain text, with apologies)

I am having the problem described in this post:

https://stat.ethz.ch/pipermail/r-sig-mac/2011-November/008848.html

In summary, running Valgrind with R hangs.

As in the linked case above, if a file test.R contains the single command print(seq(10))

Then running the command

R -d "valgrind --tool=memcheck --leak-check=full" --vanilla < test.R

Produces the following output and hangs

==78868== Memcheck, a memory error detector
==78868== Copyright (C) 2002-2012, and GNU GPL'd, by Julian Seward et al.
==78868== Using Valgrind-3.9.0.SVN and LibVEX; rerun with -h for copyright info
==78868== Command: /Library/Frameworks/R.framework/Resources/bin/exec/x86_64/R --vanilla
==78868==
==78868== Warning: ignored attempt to set SIGUSR2 handler in sigaction();
==78868==          the SIGUSR2 signal is used internally by Valgrind

R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-apple-darwin10.8.0/x86_64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

>
>
>
> print(seq(10))
 [1]  1  2  3  4  5  6  7  8  9 10
>
>
>
>
>
>

I have followed the advice previously posted by Simon, used the SVN build of valgrind and recompiled R from source with --with-valgrind-instrumentation=2

I am running Mac OS X 10.6.8, valgrind-3.9.0.SVN, R version 2.15.1 and Platform: x86_64-apple-darwin10.8.0/x86_64 (64-bit).

As was the case for the previous poster, a command such as

valgrind ls

works as expected. 

I noted that Simon said he had no problem using valgrind from SVN on both Lion and Snow Leopard. Does anyone have any suggestion of what I might be doing differently, or what I could do to fix this problem?

Many thanks in advance

Erika

---

Erika Cule
PhD student
Imperial College London
Department of Epidemiology and Biostatistics
School of Public Health

erika.cule05 at imperial.ac.uk<mailto:erika.cule05 at imperial.ac.uk>