[R-SIG-Mac] Building R on Mac OSX 10.6.8

[Simon Urbanek]

On Oct 26, 2011, at 11:01 PM, Dave Pugmire wrote:

> Hi,
> I'm trying to build 2.13.2 on OSX 10.6.8 as follows:
> 
> ./configure CXX=g++ CC=gcc CFLAGS=-fno-common -fexceptions -O2
> CXXFLAGS=-fno-common -fexceptions -O2 --without-readline --enable-R-shlib
> --without-recommended-packages --prefix=/sw/R
> 

Don't change the default flags unless you know what you're doing. In particular -fno-common won't work.

Cheers,
Simon



> make
> 
> and I get the following error:
> 
> gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined
> dynamic_lookup -single_module -multiply_defined suppress -fopenmp
> -L/usr/local/lib -install_name libR.dylib -compatibility_version 2.13.0
> -current_version 2.13.2  -headerpad_max_install_names -o libR.dylib
> CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o
> arithmetic.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o
> colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o
> debug.o deparse.o deriv.o devices.o dotcode.o dounzip.o dstruct.o
> duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o
> gram.o gram-ex.o gramLatex.o gramRd.o graphics.o grep.o identical.o
> inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o
> logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o
> optimize.o options.o par.o paste.o platform.o plot.o plot3d.o plotmath.o
> print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o
> registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o
> sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o
> summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o
> ../unix/Rembedded.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a
> ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a
> ../extra/tre/libtre.a  ../extra/xz/liblzma.a ../extra/intl/libintl.a
> -L../../lib -lRblas -lgfortran    -Wl,-framework -Wl,CoreFoundation
> -licucore -lm -liconv
> ld: duplicate symbol _Rf_yychar in gramLatex.o and gram.o
> 
> 
> using gcc version 4.2.1
> gcc -v
> Using built-in specs.
> Target: i686-apple-darwin10
> Configured with: /var/tmp/gcc/gcc-5666.3~6/src/configure --disable-checking
> --enable-werror --prefix=/usr --mandir=/share/man
> --enable-languages=c,objc,c++,obj-c++
> --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib
> --build=i686-apple-darwin10 --program-prefix=i686-apple-darwin10-
> --host=x86_64-apple-darwin10 --target=i686-apple-darwin10
> --with-gxx-include-dir=/include/c++/4.2.1
> Thread model: posix
> gcc version 4.2.1 (Apple Inc. build 5666) (dot 3)
> 
> 
> Anyone seen this? Solution?
> 
> Thanks,
> Dave
> 
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