[R-SIG-Mac] test failures

Fri Jul 1 03:59:06 CEST 2011

On 11-06-30 9:48 PM, BABA Yoshihiko wrote:
> Dear all,
>
> I am a MacOSX/Fink (which is more or less like Debian's APT) maintainer and making R binary. One of the users tried test suite with make -k check and get the following results. Some differences are numerical, while others show sign differences in the result.
>
> Could someone possible explain/fix them?

You need to examine the differences, and decide which ones are problems, 
and which ones are inconsequential.  If you think something is a 
problem, then tell us that.

Sometimes numerical differences (including signs) matter, and sometimes 
they don't.

Duncan Murdoch

>
> Thanks
>
> --------
>
> #!/bin/sh -ev
> make -k check || exit 2
> make[2]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
> WARNING: ignoring environment value of R_HOME
> Testing examples for package 'base'
> Testing examples for package 'tools'
>   comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
> Testing examples for package 'utils'
> Testing examples for package 'grDevices'
>   comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ...
> 1951c1951
> <  [1,]  0.00000   0.000000  0.000000e+00
> ---
>> [1,]  0.00000  0.000000e+00  0.000000e+00
> 1952c1952
> <  [2,] 53.48418 175.364685  3.780017e+01
> ---
>> [2,] 53.48418  1.753647e+02  3.780017e+01
> 1953c1953
> <  [3,] 71.91841 -68.706608  8.786408e+01
> ---
>> [3,] 71.91841 -6.870661e+01  8.786408e+01
> 1954c1954
> <  [4,] 32.24075  -9.660595 -1.301930e+02
> ---
>> [4,] 32.24075 -9.660595e+00 -1.301930e+02
> 1955c1955
> <  [5,] 91.01106 -71.173035 -1.534147e+01
> ---
>> [5,] 91.01106 -7.117303e+01 -1.534147e+01
> 1956c1956
> <  [6,] 60.50231  84.566776 -1.081465e+02
> ---
>> [6,] 60.50231  8.456678e+01 -1.081465e+02
> 1957c1957
> <  [7,] 97.14950   7.898148  1.064410e+02
> ---
>> [7,] 97.14950  7.898148e+00  1.064410e+02
> 1958c1958
> <  [8,] 76.97594   0.000000 -5.554930e-14
> ---
>> [8,] 76.97594 -2.777465e-14 -5.554930e-14
> Testing examples for package 'graphics'
>   comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
> Testing examples for package 'stats'
>   comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ...
> 6355c6355
> <  Grand Mean: 291.5937
> ---
>> Grand Mean: 291.5938
> 12721c12721
> <  Murder   -0.536  0.418 -0.341 -0.649
> ---
>> Murder   -0.536  0.418 -0.341  0.649
> 12722c12722
> <  Assault  -0.583  0.188 -0.268  0.743
> ---
>> Assault  -0.583  0.188 -0.268 -0.743
> 12723c12723
> <  UrbanPop -0.278 -0.873 -0.378 -0.134
> ---
>> UrbanPop -0.278 -0.873 -0.378  0.134
> 14355c14355
> <  Grand Mean: 291.5937
> ---
>> Grand Mean: 291.5938
> 15442c15442
> <  Murder   -0.54   0.42  -0.34  -0.65
> ---
>> Murder   -0.54   0.42  -0.34   0.65
> 15443c15443
> <  Assault  -0.58         -0.27   0.74
> ---
>> Assault  -0.58         -0.27  -0.74
> Testing examples for package 'datasets'
>   comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
> Testing examples for package 'methods'
>   comparing 'methods-Ex.Rout' to 'methods-Ex.Rout.save' ... OK
> Testing examples for package 'grid'
>   comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
> Testing examples for package 'splines'
>   comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
> Testing examples for package 'stats4'
>   comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
> Testing examples for package 'tcltk'
> Testing examples for package 'compiler'
> make[2]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
> running strict specific tests
> running code in 'eval-etc.R' ... OK
>   comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ...WARNING: ignoring environment value of R_HOME
> 1d0
> <  WARNING: ignoring environment value of R_HOME
> make[3]: *** [eval-etc.Rout] Error 1
> running code in 'simple-true.R' ... OK
>   comparing 'simple-true.Rout' to './simple-true.Rout.save' ...WARNING: ignoring environment value of R_HOME
> 1d0
> <  WARNING: ignoring environment value of R_HOME
> make[3]: *** [simple-true.Rout] Error 1
> running code in 'arith-true.R' ... OK
>   comparing 'arith-true.Rout' to './arith-true.Rout.save' ...WARNING: ignoring environment value of R_HOME
> 1d0
> <  WARNING: ignoring environment value of R_HOME
> make[3]: *** [arith-true.Rout] Error 1
> running code in 'arith.R' ... OK
>   comparing 'arith.Rout' to './arith.Rout.save' ...WARNING: ignoring environment value of R_HOME
> 1d0
> <  WARNING: ignoring environment value of R_HOME
> make[3]: *** [arith.Rout] Error 1
> running code in 'lm-tests.R' ... OK
>   comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ...WARNING: ignoring environment value of R_HOME
> 1d0
> <  WARNING: ignoring environment value of R_HOME
> make[3]: *** [lm-tests.Rout] Error 1
> running code in 'ok-errors.R' ... OK
>   comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ...WARNING: ignoring environment value of R_HOME
> 1d0
> <  WARNING: ignoring environment value of R_HOME
> make[3]: *** [ok-errors.Rout] Error 1
> running code in 'method-dispatch.R' ... OK
>   comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ...WARNING: ignoring environment value of R_HOME
> 1d0
> <  WARNING: ignoring environment value of R_HOME
> make[3]: *** [method-dispatch.Rout] Error 1
> running code in 'array-subset.R' ... OK
>   comparing 'array-subset.Rout' to './array-subset.Rout.save' ...WARNING: ignoring environment value of R_HOME
> 1d0
> <  WARNING: ignoring environment value of R_HOME
> make[3]: *** [array-subset.Rout] Error 1
> running code in 'any-all.R' ... OK
>   comparing 'any-all.Rout' to './any-all.Rout.save' ...WARNING: ignoring environment value of R_HOME
> 1d0
> <  WARNING: ignoring environment value of R_HOME
> make[3]: *** [any-all.Rout] Error 1
> running code in 'd-p-q-r-tests.R' ... OK
>   comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ...WARNING: ignoring environment value of R_HOME
> 1d0
> <  WARNING: ignoring environment value of R_HOME
> make[3]: *** [d-p-q-r-tests.Rout] Error 1
> make[3]: Target `test-Specific-strict' not remade because of errors.
> make[2]: *** [test-Specific] Error 2
> make[1]: *** [test-all-basics] Error 1
> make[1]: Target `check' not remade because of errors.
> make: *** [check] Error 2
>
>
>
>
>
> --
> BABA Yoshihiko
> Urban Design Laboratory, Tokyo University
> TEL: +81 (0)90 1738 7439
>
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