[R-SIG-Mac] arules installation
David Winsemius
dwinsemius at comcast.net
Thu Dec 8 01:58:37 CET 2011
On Dec 7, 2011, at 4:35 PM, R. Michael Weylandt wrote:
> Theoretically, but I've always built packages from Terminal so I can't
> promise it. Also, there's an outside chance you'll need a Fortran
> compiler too, but I haven't looked at the source files to confirm.
>
> I'd also suggest you try your CRAN mirror one more time and make sure
> you are getting the 2.13 version: for instance, I used this link:
>
> http://lib.stat.cmu.edu/R/CRAN/bin/macosx/leopard/contrib/2.13/arules_1.0-7.tgz'
>
> I believe that the link shown on the CRAN page will automatically give
> you the current release (2.14) build.
>
> Michael
>
> 2011/12/7 Thomas Chesney <Thomas.Chesney at nottingham.ac.uk>:
>> Michael - thanks for the reply. So if I install my XCode C complier,
You would want all of the Xcode to be installed including the Fortran
complier and other support.
>> then download the latest arules source file which is:
>> arules_1.0-7.tar.gz and then run: install.packages("/Users/thomas/
>> Documents/arules_1.0-7.tar.gz", repos=NULL, type="source") it will
>> just work? (Why will that work with the latest version but the
>> latest .tgz won't?)
It should succeed that way if Xocde is properly installed. Why didn't
you try that?
AND: Why are you staying with 2.13? Why not update your R version?
>>
>> What I usually do to install a package is download the .tgz file,
>> double click to unzip it, then copy the resulting folder into
>> Library/Frameworks/R.Framework/Resources/Library.
That is only going to work for packages that are all-R and no C/Fortran
>> I could install the latest R and then do that for arules, but then
>> I'd have to do the same for dozens of other packages (or could I
>> just copy them to another folder, update R, and then copy them to
>> R.Framework/Resources/Library saying no to any replace file popups?)
The usual recommendation is after updating R , which creates a new
Resources folder with ./library/, to copy/paste the contents of the
2.13 ../library/ into the new one and then at the R console to execute:
update.packages(checkBuilt=TRUE) # and probably also include the
ask=FALSE option
I usually forget that ask option and then have to keep typing Y<cr>.
Best;
David.
>>
>> Thomas
>>
>> ________________________________________
>> From: R. Michael Weylandt <michael.weylandt at gmail.com> [michael.weylandt at gmail.com
>> ]
>> Sent: Wednesday, December 07, 2011 1:36 PM
>> To: Thomas Chesney
>> Cc: r-sig-mac at r-project.org
>> Subject: Re: [R-SIG-Mac] arules installation
>>
>> You need a C compiler: the usual recommendation is XCode which you
>> can get off your OS X install DVD or download from Apple Developer
>> pages.
>>
>> Out of curiosity, how did you download the first time? I can still
>> get 2.13.x packages from CRAN though I haven't tried with arules
>> specifically.
>>
>> Michael
>>
>> On Dec 7, 2011, at 6:05 AM, Thomas Chesney <Thomas.Chesney at nottingham.ac.uk
>> > wrote:
>>
>>> I sent the following and got the following reply to the R-Help,
>>> and then was told I should have sent it here.
>>>
>>> On 07.12.2011 10:54, Thomas Chesney wrote:
>>>> I'm using R version 2.13.0 (2011-04-13) on Mac OS X and I get the
>>>> following error message with library(arules):
>>>>
>>>> Loading required package: Matrix
>>>> Loading required package: lattice
>>>>
>>>> Attaching package: 'Matrix'
>>>>
>>>> The following object(s) are masked from 'package:base':
>>>>
>>>> det
>>>>
>>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>>> unable to load shared object '/Library/Frameworks/R.framework/
>>>> Versions/2.13/Resources/library/arules/libs/i386/arules.so':
>>>> dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/
>>>> library/arules/libs/i386/arules.so, 6): Library not loaded: /
>>>> Library/Frameworks/R.framework/Versions/2.14/Resources/lib/
>>>> libR.dylib
>>>> Referenced from: /Library/Frameworks/R.framework/Versions/2.13/
>>>> Resources/library/arules/libs/i386/arules.so
>>>> Reason: image not found
>>>> In addition: Warning message:
>>>> package 'arules' was built under R version 2.14.0
>>>> Error: package/namespace load failed for 'arules'
>>>
>>> Install an arules binary that was built for your version of R
>>> (reather
>>> than a later one) or install from sources.
>>>
>>> Uwe Ligges
>>>
>>>>
>>>> The arules CRAN page says: Depends: R (≥ 2.11.0), stats,
>>>> methods, Matrix (≥ 0.999375-38), all of which I have - anyone
>>>> know what the problem is? I'm really relunctant to update R as
>>>> its Package Installer is blocked somehow by our Firewall and
>>>> updating all the packages I use is a major hassle.
>>>>
>>>> Thank you (as always!)
>>>>
>>>> Thomas
>>>>
>>>> PS on a related note, are the package installer port settings
>>>> available somewhere and I'll send them to IT, ask them to unblock
>>>> it?
>>>
>>>
>>> -------------------------------------
>>>
>>> I tried installing from source as Prof Ligges suggested (as
>>> explained here: http://stackoverflow.com/questions/1474081/how-do-i-install-an-r-package-from-source)
>>> but got the following error:
>>>
>>> install.packages("/Users/thomas/Documents/arules_1.0-7.tar.gz",
>>> repos=NULL, type="source")
>>> * installing *source* package 'arules' ...
>>> ** libs
>>> *** arch - i386
>>> sh: make: command not found
>>> ERROR: compilation failed for package 'arules'
>>> * removing '/Library/Frameworks/R.framework/Versions/2.13/
>>> Resources/library/arules'
>>> Warning message:
>>> In install.packages("/Users/thomas/Documents/
>>> arules_1.0-7.tar.gz", :
>>> installation of package '/Users/thomas/Documents/
>>> arules_1.0-7.tar.gz' had non-zero exit status
>>>
>>> Why would installing from source make any difference? Prof Ripley
>>> suggested I use arules for R.13.0, which I would if I could find it.
>>>
>>> Has anyone got any advice?
>>>
>>> Thank you,
>>>
>>> Thomas
>>> This message and any attachment are intended solely for the
>>> addressee and may contain confidential information. If you have
>>> received this message in error, please send it back to me, and
>>> immediately delete it. Please do not use, copy or disclose the
>>> information contained in this message or in any attachment. Any
>>> views or opinions expressed by the author of this email do not
>>> necessarily reflect the views of the University of Nottingham.
>>>
>>> This message has been checked for viruses but the contents of an
>>> attachment
>>> may still contain software viruses which could damage your
>>> computer system:
>>> you are advised to perform your own checks. Email communications
>>> with the
>>> University of Nottingham may be monitored as permitted by UK
>>> legislation.
>>> _______________________________________________
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac at r-project.org
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac at r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
David Winsemius, MD
West Hartford, CT
More information about the R-SIG-Mac
mailing list