[R-SIG-Mac] Problem (segfault) using surveillance package on Mac (not on FreeBSD)

Ben Madin lists at remoteinformation.com.au
Tue Nov 9 01:13:50 CET 2010


G'day all,

I am having a problem with a function in surveillance package when trying to use one function on my mac (either GUI or commandline). It works fine on FreeBSD, and the contributor uses Linux or windows, so I thought I might ask here first - my apologies in advance. Many of the package functions work absolutely fine on all three.

Using the spatio-temporal cluster detection function stcd, and using the example in the help file, the final command takes about 1 second to return a result on FreeBSD (output of sessionInfo() first):

R version 2.11.1 (2010-05-31) 
i386-portbld-freebsd7.0 

locale:
[1] C

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] splancs_2.01-27    surveillance_1.2-1 Matrix_0.999375-44 msm_0.9.7         
 [5] vcd_1.2-9          colorspace_1.0-1   MASS_7.3-7         maptools_0.7-38   
 [9] lattice_0.19-13    foreign_0.8-41     sp_0.9-72          spc_0.3           
[13] xtable_1.5-6      

loaded via a namespace (and not attached):
[1] mvtnorm_0.9-92  splines_2.11.1  survival_2.35-8 tools_2.11.1   
Warning messages:
1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 
2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 
3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 
 

library(surveillance)
library("splancs")
data(burkitt)
# order the times
burkitt <- burkitt[order(burkitt$t), ]
#Parameters for the SR detection
epsilon <- 0.5 # relative change within the cluster
radius <- 20 # radius
threshold <- 161 # threshold limit
res <- stcd(x=burkitt$x, y=burkitt$y, t=burkitt$t, radius=radius, epsilon=epsilon, areaA=1, areaAcapBk=1, threshold=threshold)


takes about 1 second


Using the R GUI - latest patches from r.research.att.com :

> sessionInfo()
R version 2.11.1 Patched (2010-09-30 r53084)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/C/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] splancs_2.01-27    surveillance_1.2-1 Matrix_0.999375-44 msm_0.9.7          vcd_1.2-9          colorspace_1.0-1  
 [7] MASS_7.3-7         maptools_0.7-38    lattice_0.19-13    foreign_0.8-41     sp_0.9-72          spc_0.3           
[13] xtable_1.5-6      

loaded via a namespace (and not attached):
[1] mvtnorm_0.9-92  splines_2.11.1  survival_2.35-8 tools_2.11.1   



> library(surveillance)
Loading required package: xtable
Loading required package: spc
Loading required package: sp
Loading required package: maptools
Loading required package: foreign
Loading required package: lattice

	Note: polygon geometry computations in maptools
 	depend on the package gpclib, which has a
 	restricted licence. It is disabled by default;
 	to enable gpclib, type gpclibPermit()

Checking rgeos availability as gpclib substitute:
FALSE 
Loading required package: vcd
Loading required package: MASS
Loading required package: grid
Loading required package: colorspace
Loading required package: msm
Loading required package: Matrix

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

> library("splancs")

Spatial Point Pattern Analysis Code in S-Plus

 Version 2 - Spatial and Space-Time analysis
> data(burkitt)
> # order the times
> burkitt <- burkitt[order(burkitt$t), ]
> #Parameters for the SR detection
> epsilon <- 0.5 # relative change within the cluster
> radius <- 20 # radius
> threshold <- 161 # threshold limit
> res <- stcd(x=burkitt$x,
+             y=burkitt$y,
+             t=burkitt$t,
+             radius=radius,
+             epsilon=epsilon,
+             areaA=1,
+             areaAcapBk=1,
+             threshold=threshold)

 *** caught segfault ***
address 0x11b115000, cause 'memory not mapped'

Traceback:
 1: .C("SRspacetime", x = as.double(x), y = as.double(y), t = as.double(t),     n = as.integer(n), radius = as.double(radius), epsilon = as.double(epsilon),     areaA = as.double(areaA), areaAcapBk = as.double(areaAcapBk),     cusum = as.integer(cusum), threshold = as.double(threshold),     R = as.double(numeric(n)), idxFA = as.integer(-1), idxCC = as.integer(-1),     PACKAGE = "surveillance")
 2: stcd(x = burkitt$x, y = burkitt$y, t = burkitt$t, radius = radius,     epsilon = epsilon, areaA = 1, areaAcapBk = 1, threshold = threshold)

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: 

Using the R program on the commandline :

R version 2.11.1 Patched (2010-09-30 r53084)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/C/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] splancs_2.01-27    surveillance_1.2-1 Matrix_0.999375-44 msm_0.9.7         
 [5] vcd_1.2-9          colorspace_1.0-1   MASS_7.3-7         maptools_0.7-38   
 [9] lattice_0.19-13    foreign_0.8-41     sp_0.9-72          spc_0.3           
[13] xtable_1.5-6      

loaded via a namespace (and not attached):
[1] mvtnorm_0.9-92  splines_2.11.1  survival_2.35-8 tools_2.11.1   


All the commands run fine, except that the final one does not finish, and after an initial flash of enthusiasm, R ticks along between about 3 and 15% of CPU chewing up as much memory as it can. I have attached a sample at the very bottom of this email, taken before I killed it off.

I realise this could be a package function, but I know almost nothing about what goes on under the R hood, so if this helps to find a problem in the package I am very happy to switch to go back to the package authors with some help.

Thank you for your help,

cheers

Ben

Sampling process 7948 for 3 seconds with 1 millisecond of run time between samples
Sampling completed, processing symbols...
Analysis of sampling R (pid 7948) every 1 millisecond
Process:         R [7948]
Path:            /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/exec/x86_64/R
Load Address:    0x100000000
Identifier:      R
Version:         ??? (???)
Code Type:       X86-64 (Native)
Parent Process:  bash [7944]

Date/Time:       2010-11-09 10:54:49.806 +1100
OS Version:      Mac OS X 10.6.4 (10F569)
Report Version:  6

Call graph:
    2113 Thread_47293   DispatchQueue_1: com.apple.main-thread  (serial)
      2113 start
        2113 main
          2113 run_Rmainloop
            2113 R_ReplConsole
              2113 Rf_ReplIteration
                2113 Rf_eval
                  2113 do_set
                    2113 Rf_eval
                      2113 Rf_applyClosure
                        2113 Rf_eval
                          2113 do_begin
                            2113 Rf_eval
                              2113 do_set
                                2113 Rf_eval
                                  2113 do_dotCode
                                    2112 SRspacetime
                                      2048 SRspacetime
                                      60 operator new(unsigned long)
                                        58 malloc
                                          57 malloc_zone_malloc
                                            54 szone_malloc_should_clear
                                              23 allocate_pages
                                                22 __mmap
                                                1 munmap
                                              20 tiny_malloc_from_free_list
                                              11 szone_malloc_should_clear
                                            2 malloc_zone_malloc
                                            1 szone_malloc
                                          1 malloc
                                        2 operator new(unsigned long)
                                      4 std::_List_node_base::hook(std::_List_node_base*)
                                    1 dyld_stub_operator new(unsigned long)

Total number in stack (recursive counted multiple, when >=5):
        5       Rf_eval

Sort by top of stack, same collapsed (when >= 5):
        SRspacetime        2048
        __mmap        22
        tiny_malloc_from_free_list        20
        szone_malloc_should_clear        11

Binary Images:
       0x100000000 -        0x100000fff +R ??? (???) <FAFD488F-194D-25E9-5AAD-7C87FE88E0E7> /Library/Frameworks/R.framework/Resources/bin/exec/x86_64/R
       0x100003000 -        0x100283ff3 +libR.dylib 2.11.1 (compatibility 2.11.0) <54702D15-E306-A982-468C-CAB83EFFBB19> /Library/Frameworks/R.framework/Resources/lib/x86_64/libR.dylib
       0x10036c000 -        0x10036cfef +libRblas.dylib ??? (???) <00010203-0405-0607-0809-0A0B0C0D0E0F> /Library/Frameworks/R.framework/Resources/lib/x86_64/libRblas.dylib
       0x10036f000 -        0x100425fcf +libgfortran.2.dylib 3.0.0 (compatibility 3.0.0) <ACF1816E-EA8A-4DB9-A893-A4EF0CEFFFBA> /Library/Frameworks/R.framework/Versions/2.11/Resources/lib/libgfortran.2.dylib
       0x10046a000 -        0x100494fd9 +libreadline.5.2.dylib 5.2.0 (compatibility 5.0.0) <00010203-0405-0607-0809-0A0B0C0D0E0F> /Library/Frameworks/R.framework/Versions/2.11/Resources/lib/libreadline.5.2.dylib
       0x1004e5000 -        0x1004ebff7 +methods.so ??? (???) <4DB98432-301E-37A0-001D-5EAF603B344E> /Library/Frameworks/R.framework/Resources/library/methods/libs/x86_64/methods.so
       0x1004fa000 -        0x1004fdfff +lattice.so ??? (???) <4F885824-3A4D-D238-F3CB-80F2B9E23D2F> /Library/Frameworks/R.framework/Resources/library/lattice/libs/x86_64/lattice.so
       0x1007e5000 -        0x1007eafff +sp.so ??? (???) <15758BD5-3693-774A-4166-0EEC89A5E7C2> /Library/Frameworks/R.framework/Resources/library/sp/libs/x86_64/sp.so
       0x1007ee000 -        0x1007f9ff7 +maptools.so ??? (???) <2DC74E21-4DBC-2AB7-E842-E940EC19288F> /Library/Frameworks/R.framework/Resources/library/maptools/libs/x86_64/maptools.so
       0x101f76000 -        0x101fa0ffa +grDevices.so ??? (???) <1620E0C8-397E-A7CE-802E-BA2E9BCCB927> /Library/Frameworks/R.framework/Resources/library/grDevices/libs/x86_64/grDevices.so
       0x101fb3000 -        0x101fcefff +spc.so ??? (???) <D33386E5-7FBC-6164-7C67-B5392FFFAE9F> /Library/Frameworks/R.framework/Resources/library/spc/libs/x86_64/spc.so
       0x101fd4000 -        0x101fedfff +grid.so ??? (???) <FFE2BBB2-2915-CB14-5F5D-5A79F4EFE9D0> /Library/Frameworks/R.framework/Resources/library/grid/libs/x86_64/grid.so
       0x101ff9000 -        0x101ffbfff +splines.so ??? (???) <E88C806A-1A44-8388-463B-2EE61BF3284C> /Library/Frameworks/R.framework/Resources/library/splines/libs/x86_64/splines.so
       0x103087000 -        0x1030e1ff7 +stats.so ??? (???) <52F12BF1-7199-8E49-BFB9-F49797474E52> /Library/Frameworks/R.framework/Resources/library/stats/libs/x86_64/stats.so
       0x10315b000 -        0x103171fe3 +foreign.so ??? (???) <A43222B5-44F9-D92C-8CDA-5FC40A23EB36> /Library/Frameworks/R.framework/Resources/library/foreign/libs/x86_64/foreign.so
       0x1031c6000 -        0x1031caff7 +MASS.so ??? (???) <6513FA06-202D-FF37-BF2D-918ADF2FAF96> /Library/Frameworks/R.framework/Resources/library/MASS/libs/x86_64/MASS.so
       0x1031ce000 -        0x1031daff7 +colorspace.so ??? (???) <2F2D327A-D44E-4046-FBF4-9FC71E60676A> /Library/Frameworks/R.framework/Resources/library/colorspace/libs/x86_64/colorspace.so
       0x103208000 -        0x10321fff3 +survival.so ??? (???) <CFFBD59D-BA71-D3E7-5423-11F72751B748> /Library/Frameworks/R.framework/Resources/library/survival/libs/x86_64/survival.so
       0x103225000 -        0x10323dfff +msm.so ??? (???) <CA5AF9B0-DAA9-4694-94F1-22E660AA4364> /Library/Frameworks/R.framework/Resources/library/msm/libs/x86_64/msm.so
       0x103242000 -        0x10338dff3 +libRlapack.dylib 2.11.1 (compatibility 2.11.0) <69E85CAD-5F2D-17A9-BDCD-9C18321F34FA> /Library/Frameworks/R.framework/Resources/lib/x86_64/libRlapack.dylib
       0x1034e6000 -        0x103562fff +Matrix.so ??? (???) <06D52608-2221-8473-54C0-50992B72A98C> /Library/Frameworks/R.framework/Resources/library/Matrix/libs/x86_64/Matrix.so
       0x1037f9000 -        0x1037fcfff +tools.so ??? (???) <57188AA2-92FB-EC75-2C8B-C7186ED25584> /Library/Frameworks/R.framework/Resources/library/tools/libs/x86_64/tools.so
       0x104000000 -        0x10400dfff +mvtnorm.so ??? (???) <A4703428-412C-3E3A-158F-89804DAD539F> /Library/Frameworks/R.framework/Resources/library/mvtnorm/libs/x86_64/mvtnorm.so
       0x1046d9000 -        0x1046ecffd +surveillance.so ??? (???) <926A79F2-999E-5880-5FAC-74B749AA4D4E> /Library/Frameworks/R.framework/Resources/library/surveillance/libs/x86_64/surveillance.so
       0x1046f3000 -        0x1046fcfff +splancs.so ??? (???) <9C90F943-4D24-D665-2730-D9CF4EC88743> /Library/Frameworks/R.framework/Resources/library/splancs/libs/x86_64/splancs.so
    0x7fff5fc00000 -     0x7fff5fc3bdef  dyld 132.1 (???) <B536F2F1-9DF1-3B6C-1C2C-9075EA219A06> /usr/lib/dyld
    0x7fff8010d000 -     0x7fff801ddff7  com.apple.CFNetwork 454.9.8 (454.9.8) <24667A86-FCDA-5B58-2CDC-3BFDFE8EA985> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
    0x7fff8021f000 -     0x7fff8051dfe7  com.apple.HIToolbox 1.6.3 (???) <CF0C8524-FA82-3908-ACD0-A9176C704AED> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
    0x7fff8067f000 -     0x7fff8069fff7  com.apple.DirectoryService.Framework 3.6 (621.3) <34B17024-866F-70AF-2098-4B5FCF57AE52> /System/Library/Frameworks/DirectoryService.framework/Versions/A/DirectoryService
    0x7fff806a0000 -     0x7fff80725fff  com.apple.print.framework.PrintCore 6.2 (312.5) <28C44275-6DF8-23CB-4E7A-97E128F5A390> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
    0x7fff8076a000 -     0x7fff8078bfff  libresolv.9.dylib 41.0.0 (compatibility 1.0.0) <6993F348-428F-C97E-7A84-7BD2EDC46A62> /usr/lib/libresolv.9.dylib
    0x7fff8078c000 -     0x7fff8081cfff  com.apple.SearchKit 1.3.0 (1.3.0) <3403E658-A54E-A79A-12EB-E090E8743984> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
    0x7fff8081d000 -     0x7fff80aa4fe7  com.apple.security 6.1.1 (37594) <C32E7E37-13EC-381A-7CA6-AAE3EBD2C1F1> /System/Library/Frameworks/Security.framework/Versions/A/Security
    0x7fff80aa5000 -     0x7fff80abefff  com.apple.CFOpenDirectory 10.6 (10.6) <0F46E102-8B8E-0995-BA85-3D9608F0A30C> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory
    0x7fff80abf000 -     0x7fff80bd6fef  libxml2.2.dylib 10.3.0 (compatibility 10.0.0) <7DC5239F-CD6A-820C-7C66-C528D7E27649> /usr/lib/libxml2.2.dylib
    0x7fff81256000 -     0x7fff812c0fe7  libvMisc.dylib 268.0.1 (compatibility 1.0.0) <7D8B6D68-7E70-2AF2-BF9F-2CD56145909C> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
    0x7fff816a4000 -     0x7fff816eeff7  com.apple.Metadata 10.6.3 (507.10) <641395B7-FF2C-B94C-965A-CE6A0830645F> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
    0x7fff81835000 -     0x7fff81844ff7  com.apple.opengl 1.6.9 (1.6.9) <BB8AEF81-0EC1-ED4C-360B-186C60AE745C> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
    0x7fff81845000 -     0x7fff818fefff  libsqlite3.dylib 9.6.0 (compatibility 9.0.0) <5A15E12A-AE8F-1A36-BBC7-564E7D7AD0FB> /usr/lib/libsqlite3.dylib
    0x7fff8191b000 -     0x7fff81931fef  libbsm.0.dylib ??? (???) <83676D2E-23CD-45CD-BE5C-35FCFFBBBDBB> /usr/lib/libbsm.0.dylib
    0x7fff81aa2000 -     0x7fff81acafff  com.apple.DictionaryServices 1.1.1 (1.1.1) <403E9BF2-EC47-1D32-E4B1-3D624AAA5BBD> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
    0x7fff81ef1000 -     0x7fff81f6ffff  com.apple.CoreText 3.1.0 (???) <2D2DECAA-05C4-C4D0-1233-FB682569FFB8> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText
    0x7fff81f70000 -     0x7fff821f1fef  com.apple.Foundation 6.6.3 (751.29) <DAEDB589-9F59-9556-CF8D-07556317937B> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
    0x7fff821f2000 -     0x7fff821f2ff7  com.apple.Accelerate 1.6 (Accelerate 1.6) <2BB7D669-4B40-6A52-ADBD-DA4DB3BC0B1B> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
    0x7fff821f3000 -     0x7fff822d9fe7  com.apple.DesktopServices 1.5.7 (1.5.7) <8A697128-B6CA-E4A8-C200-6520D5A35FBE> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
    0x7fff822da000 -     0x7fff822daff7  com.apple.CoreServices 44 (44) <210A4C56-BECB-E3E4-B6EE-7EC53E02265D> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
    0x7fff822e7000 -     0x7fff8261afe7  com.apple.CoreServices.CarbonCore 861.13 (861.13) <BC2F9B4E-D305-D717-D97E-EC78C7DE9EE9> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
    0x7fff82644000 -     0x7fff826c1fef  libstdc++.6.dylib 7.9.0 (compatibility 7.0.0) <35ECA411-2C08-FD7D-11B1-1B7A04921A5C> /usr/lib/libstdc++.6.dylib
    0x7fff826c9000 -     0x7fff826f4ff7  libxslt.1.dylib 3.24.0 (compatibility 3.0.0) <87A0B228-B24A-C426-C3FB-B40D7258DD49> /usr/lib/libxslt.1.dylib
    0x7fff82740000 -     0x7fff82740ff7  com.apple.vecLib 3.6 (vecLib 3.6) <08D3D45D-908B-B86A-00BA-0F978D2702A7> /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
    0x7fff82741000 -     0x7fff82743fff  libRadiance.dylib ??? (???) <D67C08B6-4D4A-916D-E936-528E145A56E2> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
    0x7fff82744000 -     0x7fff8277cfef  libcups.2.dylib 2.8.0 (compatibility 2.0.0) <31A78904-A500-0DA9-0609-F1EB81383326> /usr/lib/libcups.2.dylib
    0x7fff827c2000 -     0x7fff82817fef  com.apple.framework.familycontrols 2.0.1 (2010) <239940AC-2427-44C6-9E29-998D0ABECDF3> /System/Library/PrivateFrameworks/FamilyControls.framework/Versions/A/FamilyControls
    0x7fff82818000 -     0x7fff82876ff7  com.apple.framework.IOKit 2.0 (???) <010C3398-7363-8F4B-719C-263867F15F63> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
    0x7fff8295f000 -     0x7fff829a0fef  com.apple.QD 3.35 (???) <022EDBCA-DE3A-6410-F263-2FC7DA8FAC88> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
    0x7fff829a1000 -     0x7fff83397fff  com.apple.AppKit 6.6.6 (1038.29) <7BDD335D-5425-0354-5AD6-41C4F1B4A2F4> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
    0x7fff83464000 -     0x7fff834fefff  com.apple.ApplicationServices.ATS 275.11.1 (???) <0A898C0C-41A0-B9BF-0A38-74FB029CA049> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
    0x7fff8354e000 -     0x7fff8360bff7  com.apple.CoreServices.OSServices 357 (357) <718F0719-DC9F-E392-7C64-9D7DFE3D02E2> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
    0x7fff8360c000 -     0x7fff83653ff7  com.apple.coreui 2 (114) <BB09E685-1F5D-0676-1A0E-295610B387A8> /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
    0x7fff836dc000 -     0x7fff83724ff7  libvDSP.dylib 268.0.1 (compatibility 1.0.0) <170DE04F-89AB-E295-0880-D69CAFBD7979> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
    0x7fff83725000 -     0x7fff8372bff7  com.apple.DiskArbitration 2.3 (2.3) <857F6E43-1EF4-7D53-351B-10DE0A8F992A> /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
    0x7fff8372c000 -     0x7fff8375dfff  libGLImage.dylib ??? (???) <7EF50768-54F1-5883-C40F-DAF83810C3FA> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
    0x7fff843d2000 -     0x7fff84acf067  com.apple.CoreGraphics 1.545.0 (???) <88892F58-F785-2E30-50B1-E9CC8775E79F> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
    0x7fff84d21000 -     0x7fff84d32ff7  libz.1.dylib 1.2.3 (compatibility 1.0.0) <FB5EE53A-0534-0FFA-B2ED-486609433717> /usr/lib/libz.1.dylib
    0x7fff84d63000 -     0x7fff84d6eff7  com.apple.speech.recognition.framework 3.11.1 (3.11.1) <60484D84-BA63-13DD-50E9-ABDA402C3C45> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
    0x7fff84d6f000 -     0x7fff84e88fef  libGLProgrammability.dylib ??? (???) <0E55A58B-5B42-669F-2655-90893554CA21> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
    0x7fff8501e000 -     0x7fff8501fff7  com.apple.TrustEvaluationAgent 1.1 (1) <306FD9EE-A301-41D5-EBDE-2FC52F28229C> /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
    0x7fff85022000 -     0x7fff851d8fef  com.apple.ImageIO.framework 3.0.3 (3.0.3) <A32D0B5A-7149-7739-22D3-84D38B07E9E5> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO
    0x7fff851fe000 -     0x7fff852adfff  edu.mit.Kerberos 6.5.10 (6.5.10) <F3F76EDF-5660-78F0-FE6E-33B6174F55A4> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
    0x7fff852ae000 -     0x7fff852e9fff  com.apple.AE 496.4 (496.4) <64C27EC8-FC7F-EA6B-9435-9A3452425915> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
    0x7fff852ea000 -     0x7fff852eaff7  com.apple.ApplicationServices 38 (38) <10A0B9E9-4988-03D4-FC56-DDE231A02C63> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
    0x7fff852eb000 -     0x7fff8533aff7  com.apple.DirectoryService.PasswordServerFramework 6.0 (6.0) <17EFD646-6F53-36E9-56BF-5A339E83EFFC> /System/Library/PrivateFrameworks/PasswordServer.framework/Versions/A/PasswordServer
    0x7fff853e2000 -     0x7fff853e3ff7  com.apple.audio.units.AudioUnit 1.6.3 (1.6.3) <5264A680-010D-4DD6-911E-04AD0DA3D0B4> /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
    0x7fff853e4000 -     0x7fff85407fff  com.apple.opencl 12.1 (12.1) <403E8F37-4348-B9BC-08E6-7693A995B7EC> /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
    0x7fff8540b000 -     0x7fff8541ffff  libGL.dylib ??? (???) <5AD69545-D1A3-C017-C7AF-B4AFD6F08FA2> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
    0x7fff854c7000 -     0x7fff85685fff  libicucore.A.dylib 40.0.0 (compatibility 1.0.0) <0E53A4A6-AC06-1B61-2285-248F534EE356> /usr/lib/libicucore.A.dylib
    0x7fff85686000 -     0x7fff8568aff7  libmathCommon.A.dylib 315.0.0 (compatibility 1.0.0) <95718673-FEEE-B6ED-B127-BCDBDB60D4E5> /usr/lib/system/libmathCommon.A.dylib
    0x7fff8568b000 -     0x7fff85690fff  libGFXShared.dylib ??? (???) <1B50D804-966B-30D2-D0FD-B090B6FEAC7E> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
    0x7fff85691000 -     0x7fff85747fff  libobjc.A.dylib 227.0.0 (compatibility 1.0.0) <B1F5CDC0-96BD-C7C0-BEAA-1E2259DDE067> /usr/lib/libobjc.A.dylib
    0x7fff85764000 -     0x7fff85924fef  libSystem.B.dylib 125.2.0 (compatibility 1.0.0) <95E02DD0-ADEA-745B-E7FA-ABA064E4658C> /usr/lib/libSystem.B.dylib
    0x7fff85a30000 -     0x7fff85ad0fff  com.apple.LaunchServices 362.1 (362.1) <4529EF9C-45C7-E2E3-6726-4A5AD382566D> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
    0x7fff85ad1000 -     0x7fff85b12fff  com.apple.SystemConfiguration 1.10.2 (1.10.2) <BC27BDD4-9CC8-9AF0-B4C2-DD50FD751CBF> /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
    0x7fff85b13000 -     0x7fff85bd3fff  libFontParser.dylib ??? (???) <A4F8189D-1D5B-2F8D-E78E-6D934A8E8407> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib
    0x7fff85c47000 -     0x7fff85c4dff7  IOSurface ??? (???) <EB2019F6-7C5C-3D59-E11F-6119466C12A9> /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface
    0x7fff85c4e000 -     0x7fff85c73ff7  com.apple.CoreVideo 1.6.1 (45.5) <BB098B75-BA61-50E6-FE8E-FFE285BDECE8> /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
    0x7fff85cb1000 -     0x7fff85e26ff7  com.apple.CoreFoundation 6.6.3 (550.29) <48810602-63C3-994D-E563-DD02B16E76E1> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
    0x7fff862b6000 -     0x7fff86307fe7  com.apple.HIServices 1.8.0 (???) <A16322D3-8EEC-9928-4730-8916C21D8187> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
    0x7fff866ea000 -     0x7fff867e2ff7  libiconv.2.dylib 7.0.0 (compatibility 7.0.0) <E0683DF0-8180-58A2-BA49-511111D4F36E> /usr/lib/libiconv.2.dylib
    0x7fff867e3000 -     0x7fff867e3ff7  com.apple.Accelerate.vecLib 3.6 (vecLib 3.6) <DA9BFF01-40DF-EBD5-ABB7-787DAF2D77CF> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
    0x7fff867e4000 -     0x7fff867f2ff7  libkxld.dylib ??? (???) <EE840168-1F67-6219-8BA3-C46039BCC8B3> /usr/lib/system/libkxld.dylib
    0x7fff867f3000 -     0x7fff86819fe7  libJPEG.dylib ??? (???) <4060F3E2-BAD3-244F-D777-51BA16569DA4> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
    0x7fff86827000 -     0x7fff86870fef  libGLU.dylib ??? (???) <88F0E457-EE53-B5FF-6A1B-D0326D0C643D> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
    0x7fff86b0d000 -     0x7fff86b8cfef  com.apple.audio.CoreAudio 3.2.2 (3.2.2) <243E456E-7A74-BE76-FF18-E589BDCAA785> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
    0x7fff86b8d000 -     0x7fff86c19fef  SecurityFoundation ??? (???) <6860DE26-0D42-D1E8-CD7C-5B42D78C1E1D> /System/Library/Frameworks/SecurityFoundation.framework/Versions/A/SecurityFoundation
    0x7fff86e46000 -     0x7fff86e58fe7  libsasl2.2.dylib 3.15.0 (compatibility 3.0.0) <76B83C8D-8EFE-4467-0F75-275648AFED97> /usr/lib/libsasl2.2.dylib
    0x7fff86e8a000 -     0x7fff86ec9fef  libncurses.5.4.dylib 5.4.0 (compatibility 5.4.0) <E1F34D53-3D62-78C0-CAD8-8AD22C110A9E> /usr/lib/libncurses.5.4.dylib
    0x7fff872fa000 -     0x7fff87693ff7  com.apple.QuartzCore 1.6.2 (227.22) <76EE0A32-B20B-F316-ADDD-4230329253D5> /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
    0x7fff87966000 -     0x7fff87a1bfe7  com.apple.ink.framework 1.3.3 (107) <D76C7591-B060-E2DE-6634-968FDABD87EF> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
    0x7fff87a1c000 -     0x7fff87a3afff  libPng.dylib ??? (???) <F6932C8D-E6B1-0871-B698-15180AA948F7> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
    0x7fff87a3b000 -     0x7fff87af0fe7  com.apple.ColorSync 4.6.3 (4.6.3) <AA93AD96-6974-9104-BF55-AF7A813C8A1B> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
    0x7fff87b48000 -     0x7fff87b4bff7  libCoreVMClient.dylib ??? (???) <CE19A78F-B76D-244A-1C04-0544B914F728> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
    0x7fff87b9f000 -     0x7fff87bb3ff7  com.apple.speech.synthesis.framework 3.10.35 (3.10.35) <63C87CF7-56B3-4038-8136-8C26E96AD42F> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
    0x7fff87bb4000 -     0x7fff883befe7  libBLAS.dylib 219.0.0 (compatibility 1.0.0) <EEE5CE62-9155-6559-2AEA-05CED0F5B0F1> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
    0x7fff883ef000 -     0x7fff8843efef  libTIFF.dylib ??? (???) <A66CBA9C-A38D-5EDB-BFB5-CB398F033D6F> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
    0x7fff8843f000 -     0x7fff8857dfff  com.apple.CoreData 102.1 (251) <782F29CA-ACC7-4A77-5772-52FBE2CEFB5E> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
    0x7fff88587000 -     0x7fff8858cfff  libGIF.dylib ??? (???) <21FC6B02-6AC3-C4DB-0B50-98144802274C> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
    0x7fff88600000 -     0x7fff88601fff  liblangid.dylib ??? (???) <EA4D1607-2BD5-2EE2-2A3B-632EEE5A444D> /usr/lib/liblangid.dylib
    0x7fff88724000 -     0x7fff88770fff  libauto.dylib ??? (???) <205CE82B-3DE0-4A9D-CEB9-F6A3DDA22ED4> /usr/lib/libauto.dylib
    0x7fff88836000 -     0x7fff8884bff7  com.apple.LangAnalysis 1.6.6 (1.6.6) <DC999B32-BF41-94C8-0583-27D9AB463E8B> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
    0x7fff8884f000 -     0x7fff88c93fef  libLAPACK.dylib 219.0.0 (compatibility 1.0.0) <E14EC4C6-B055-A4AC-B971-42AB644E4A7C> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
    0x7fff88c94000 -     0x7fff88da3fe7  libcrypto.0.9.8.dylib 0.9.8 (compatibility 0.9.8) <36DA89A6-3AF5-86F2-BDD5-B94C7C0844D4> /usr/lib/libcrypto.0.9.8.dylib
    0x7fff88dc7000 -     0x7fff88ea1ff7  com.apple.vImage 4.0 (4.0) <354F34BF-B221-A3C9-2CA7-9BE5E14AD5AD> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
    0x7fff88eb9000 -     0x7fff88fdefef  com.apple.audio.toolbox.AudioToolbox 1.6.3 (1.6.3) <4931DCF6-072F-A4FA-0989-4C4B83BDF98A> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
    0x7fff8905c000 -     0x7fff89072fe7  com.apple.MultitouchSupport.framework 205.34 (205.34) <01AAE66D-C2DF-4EF5-FC7B-E89E08C02A01> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
    0x7fff89091000 -     0x7fff890a0fff  com.apple.NetFS 3.2.1 (3.2.1) <3FC302C9-A5C6-A9CA-08CE-435AD05499F1> /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS
    0x7fff890a1000 -     0x7fff890a8fff  com.apple.OpenDirectory 10.6 (10.6) <72A65D76-7831-D31E-F1B3-9E48BF26A98B> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/OpenDirectory
    0x7fffffe00000 -     0x7fffffe01fff  libSystem.B.dylib ??? (???) <95E02DD0-ADEA-745B-E7FA-ABA064E4658C> /usr/lib/libSystem.B.dylib
Sample analysis of process 7948 written to file /dev/stdout



More information about the R-SIG-Mac mailing list