[R-SIG-Mac] Rcpp 0.8.3 on Mac OS X 10.5.8

Simon Urbanek simon.urbanek at r-project.org
Tue Jul 13 17:57:01 CEST 2010 

On Jul 13, 2010, at 8:13 AM, Ken Knoblauch wrote:

> Thanks.  I'm in mode d'attente...
> 

I did not see the exact OS version mentioned anywhere but as Romain pointed out it's working just fine on OS X 10.5.8 with gcc 5577:

hagal:~$ gcc --version
i686-apple-darwin9-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5577)
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

hagal:~$ uname -r
9.8.0


[...]
* installing *source* package 'Rcpp' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I../inst/include/ -I/usr/local/include    -fPIC  -g -O2 -c Date.cpp -o Date.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I../inst/include/ -I/usr/local/include    -fPIC  -g -O2 -c DateVector.cpp -o DateVector.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I../inst/include/ -I/usr/local/include    -fPIC  -g -O2 -c Datetime.cpp -o Datetime.o
[...]

So my only advice really is to re-install Xcode...

Cheers,
Simon


> 
> Quoting Romain Francois <romain.francois at dbmail.com>:
> 
>> 
>> Le 13/07/10 13:59, Ken Knoblauch a écrit :
>>> Salut Romain,
>>> 
>>> Thanks for your rapid response. Toujours pas de chance.
>>> 
>>> Just for verification, my gcc
>>> 
>>> [Macintosh-83:~] knoblauch% gcc --version
>>> i686-apple-darwin9-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5577)
>>> Copyright (C) 2007 Free Software Foundation, Inc.
>>> This is free software; see the source for copying conditions. There is NO
>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>> 
>> IIRC, this is the version (both OS and compiler version) that is used
>> on CRAN so there is nothing fundamentally wrong about these.
>> 
>> I'm cc'ing the r-sig-mac mailing list where people might have more
>> clues, as I am afraid I'm short :-(
>> 
>> Romain
>> 
>>> [Macintosh-83:~] knoblauch% svn checkout
>>> svn://svn.r-forge.r-project.org/svnroot/rcpp/pkg
>>> A pkg/RcppExamples
>>> ...
>>> 
>>> [Macintosh-83:~] knoblauch% cd pkg
>>> [Macintosh-83:~/pkg] knoblauch% R CMD INSTALL -l
>>> ~/Library/R/2.11/library/ Rcpp
>>> * installing *source* package ‘Rcpp’ ...
>>> ** libs
>>> *** arch - i386
>>> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/i386
>>> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o Date.o
>>> ../inst/include/Rcpp/internal/export.h: In function 'void
>>> Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator,
>>> Rcpp::traits::r_type_primitive_tag)':
>>> ../inst/include/Rcpp/internal/export.h:56: internal compiler error: Bus
>>> error
>>> Please submit a full bug report,
>>> with preprocessed source if appropriate.
>>> See <URL:http://developer.apple.com/bugreporter> for instructions.
>>> make: *** [Date.o] Error 1
>>> ERROR: compilation failed for package ‘Rcpp’
>>> * removing ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’
>>> * restoring previous ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’
>>> 
>>> So, still the same problem. Could this be a Leopard vs Snow Leopard
>>> problem?
>>> 
>>> Thanks.
>>> 
>>> best,
>>> 
>>> Ken
>>> 
>>> PS, I'll subscribe shortly, but went ahead and tried your
>>> suggestion first.
>>> 
>>> 
>>> 
>>> 
>>> Quoting Romain Francois <romain at r-enthusiasts.com>:
>>> 
>>>> Bonjour Ken,
>>>> 
>>>> We usually encourage people to use the mailing list (cc'ed) rather than
>>>> the maintainer address (you would need to subsribe first)
>>>> http://lists.r-forge.r-project.org/mailman/listinfo/rcpp-devel
>>>> 
>>>> I think this was fixed and the version 0.8.4 is on CRAN incoming.
>>>> 
>>>> Could you try the svn version and let us know if it compiles fine, it
>>>> certainly does for me on Snow Leopard.
>>>> 
>>>> $ svn checkout svn://svn.r-forge.r-project.org/svnroot/rcpp/pkg
>>>> $ R CMD INSTALL Rcpp
>>>> 
>>>> Thanks for your interest in Rcpp.
>>>> 
>>>> FWIW, my version of gcc (on snow leopard) is:
>>>> 
>>>> $ gcc --version
>>>> i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5659)
>>>> Copyright (C) 2007 Free Software Foundation, Inc.
>>>> This is free software; see the source for copying conditions. There is NO
>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>>>> PURPOSE.
>>>> 
>>>> ... time passes ...
>>>> 
>>>> Now this does sound familiar and I think we have seen some similar
>>>> errors when Rcpp was inadvertently built with gcc 4.0 on CRAN
>>>> 
>>>> Romain
>>>> 
>>>> Le 13/07/10 13:38, Ken Knoblauch a écrit :
>>>>> Hi,
>>>>> 
>>>>> I'm wondering if you can provide any suggestions for installing
>>>>> Rcpp on Mac or whether I should await the appearance of a binary?
>>>>> 
>>>>> This is the error message that I get:
>>>>> 
>>>>> R CMD INSTALL --no-multiarch -l ~/Library/R/2.11/library/
>>>>> Rcpp_0.8.3.tar.gz
>>>>> * installing *source* package ‘Rcpp’ ...
>>>>> ** libs
>>>>> *** arch - i386
>>>>> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include
>>>>> -I/Library/Frameworks/R.framework/Resources/include/i386
>>>>> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o
>>>>> Date.o
>>>>> ../inst/include/Rcpp/internal/export.h: In function 'void
>>>>> Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator,
>>>>> Rcpp::traits::r_type_primitive_tag)':
>>>>> ../inst/include/Rcpp/internal/export.h:56: internal compiler error: Bus
>>>>> error
>>>>> Please submit a full bug report,
>>>>> with preprocessed source if appropriate.
>>>>> See <URL:http://developer.apple.com/bugreporter> for instructions.
>>>>> make: *** [Date.o] Error 1
>>>>> ERROR: compilation failed for package ‘Rcpp’
>>>>> * removing ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’
>>>>> * restoring previous ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’
>>>>> 
>>>>> Is this a question of having the right compiler or ???
>>>>> 
>>>>> I did this from the command line but my sessionInfo is:
>>>>> R version 2.11.1 Patched (2010-07-09 r52501)
>>>>> i386-apple-darwin9.8.0
>>>>> 
>>>>> locale:
>>>>> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>>>>> 
>>>>> attached base packages:
>>>>> [1] stats graphics grDevices utils datasets methods
>>>>> [7] base
>>>>> 
>>>>> I don't have problems compiling any other packages from source except
>>>>> lme4a, so I would be greatful for any guidance.
>>>>> 
>>>>> Thanks.
>>>>> 
>>>>> Best,
>>>>> 
>>>>> Ken
>> 
>> 
>> 
>> -- 
>> Romain Francois
>> Professional R Enthusiast
>> +33(0) 6 28 91 30 30
>> http://romainfrancois.blog.free.fr
>> |- http://bit.ly/bc8jNi : Rcpp 0.8.4
>> |- http://bit.ly/dz0RlX : bibtex 0.2-1
>> `- http://bit.ly/a5CK2h : Les estivales 2010
> 
> 
> 
> -- 
> Ken Knoblauch
> Inserm U846
> Stem-cell and Brain Research Institute
> Department of Integrative Neurosciences
> 18 avenue du Doyen Lépine
> 69500 Bron
> France
> tel: +33 (0)4 72 91 34 77
> fax: +33 (0)4 72 91 34 61
> portable: +33 (0)6 84 10 64 10
> http://www.sbri.fr/members/kenneth-knoblauch.html
> 
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac

More information about the R-SIG-Mac mailing list