[R-SIG-Mac] Error when trying to compile R-devel
Simon Urbanek
simon.urbanek at r-project.org
Sun Sep 27 15:43:16 CEST 2009
On Sep 27, 2009, at 7:03 AM, cstrato wrote:
> Dear All,
>
> In order to test my package with the newest R-devel I wanted to
> install R-devel on my Mac Tiger 10.4.11.
>
> First I downloaded "R-devel-48594.dmg", however the installer says
> "This multi-package is missing tools that are necessary to build R
> packages from sources". Although I have currently installed
> "R-2.9.1.dmg" I am not sure if the installed tools will work with R-
> devel, so I did not install it.
>
Sure, they do. The "tools" it's talking about are simply the GNU
Fortran with you can also download separately from CRAN if you care,
but you have it already if you installed any recent R.
> Instead I downloaded the newest source "R-devel.tar.gz" (9/27/09)
> and wanted to build it:
Well, if you thought the tools don't work - how do you expect to build
R? ;) Just pick the binary and you'll be fine.
Cheers,
S
> $ cd /Volumes/CoreData/CRAN
> $ tar -zxf R-devel.tar.gz
> $ cd /Volumes/CoreData/CRAN/R-devel
> $ ./configure --with-blas='-framework vecLib' F77=/usr/local/bin/
> gfortran
> $ make
>
> Configure did work, see the output below.
> However, when running make I get the following error:
>
> building package 'tcltk'
> mkdir ../../../library/tcltk
> mkdir ../../../library/tcltk/R
> mkdir ../../../library/tcltk/exec
> mkdir ../../../library/tcltk/po
> making init.d from init.c
> making tcltk.d from tcltk.c
> making tcltk_unix.d from tcltk_unix.c
> gcc -std=gnu99 -I../../../../include -I/usr/local/include -I/usr/
> local/include -I/usr/X11R6/include -I/usr/local/include -fPIC -
> g -O2 -c init.c -o init.o
> gcc -std=gnu99 -I../../../../include -I/usr/local/include -I/usr/
> local/include -I/usr/X11R6/include -I/usr/local/include -fPIC -
> g -O2 -c tcltk.c -o tcltk.o
> gcc -std=gnu99 -I../../../../include -I/usr/local/include -I/usr/
> local/include -I/usr/X11R6/include -I/usr/local/include -fPIC -
> g -O2 -c tcltk_unix.c -o tcltk_unix.o
> In file included from tcltk_unix.c:23:
> ../../../../include/R_ext/eventloop.h:73: warning: 'struct timeval'
> declared inside parameter list
> ../../../../include/R_ext/eventloop.h:73: warning: its scope is only
> this definition or declaration, which is probably not what you want
> gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -
> undefined dynamic_lookup -single_module -multiply_defined suppress -
> L/usr/local/lib -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/local/
> lib -ltcl8.5 -L/usr/local/lib -ltk8.5 -L/usr/X11R6/lib -lX11 -Wl,-
> weak-lXss -lXext -L../../../../lib -lR -lintl -liconv -lc -Wl,-
> framework -Wl,CoreFoundation
> /usr/bin/libtool: for architecture x86_64 object: /usr/local/lib/
> libtk8.5.dylib malformed object (unknown load command 7)
> make[4]: *** [tcltk.so] Error 1
> make[3]: *** [all] Error 1
> make[2]: *** [R] Error 1
> make[1]: *** [R] Error 1
> make: *** [R] Error 1
>
> Do you know the reason for this error?
>
> Best regards
> Christian
> _._._._._._._._._._._._._._._._._._
> C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
> V.i.e.n.n.a A.u.s.t.r.i.a
> e.m.a.i.l: cstrato at aon.at
> _._._._._._._._._._._._._._._._._._
>
> Here is the output of configure:
>
> coeurebook:/Volumes/CoreData/CRAN/R-devel rabbitus$ ./configure --
> with-blas='-framework vecLib' F77=/usr/local/bin/gfortran
> checking build system type... i386-apple-darwin8.11.1
> checking host system type... i386-apple-darwin8.11.1
> loading site script './config.site'
> loading build specific script './config.site'
> checking for pwd... /bin/pwd
> checking whether builddir is srcdir... yes
> checking for working aclocal... found
> checking for working autoconf... found
> checking for working automake... found
> checking for working autoheader... found
> checking for gawk... no
> checking for mawk... no
> checking for nawk... no
> checking for awk... awk
> checking for grep that handles long lines and -e... /usr/bin/grep
> checking for egrep... /usr/bin/grep -E
> checking whether ln -s works... yes
> checking for bison... bison -y
> checking for ar... ar
> checking for a BSD-compatible install... /usr/bin/install -c
> checking for sed... /usr/bin/sed
> checking for less... /usr/bin/less
> checking for perl... /usr/bin/perl
> checking whether perl version is at least 5.8.0... yes
> checking for gtar... no
> checking for tar... /usr/bin/tar
> checking for dvips... /usr/texbin/dvips
> checking for tex... /usr/texbin/tex
> checking for latex... /usr/texbin/latex
> checking for makeindex... /usr/texbin/makeindex
> checking for pdftex... /usr/texbin/pdftex
> checking for pdflatex... /usr/texbin/pdflatex
> checking for makeinfo... /usr/texbin/makeinfo
> checking whether makeinfo version is at least 4.7... yes
> checking for texi2dvi... /usr/texbin/texi2dvi
> checking for unzip... /usr/bin/unzip
> checking for zip... /usr/bin/zip
> checking for gzip... /usr/bin/gzip
> checking for bzip2... /usr/bin/bzip2
> checking for firefox... no
> checking for mozilla... no
> checking for galeon... no
> checking for opera... no
> checking for xdg-open... no
> checking for kfmclient... no
> checking for gnome-moz-remote... no
> checking for open... /usr/bin/open
> using default browser ... /usr/bin/open
> checking for acroread... no
> checking for acroread4... no
> checking for xdg-open... no
> checking for evince... no
> checking for xpdf... no
> checking for gv... no
> checking for gnome-gv... no
> checking for ggv... no
> checking for okular... no
> checking for kpdf... no
> checking for open... /usr/bin/open
> checking for pkg-config... no
> checking for gcc... gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking how to run the C preprocessor... gcc -E
> checking whether gcc needs -traditional... no
> checking how to run the C preprocessor... gcc -E
> defining F77 to be /usr/local/bin/gfortran
> checking whether we are using the GNU Fortran 77 compiler... yes
> checking whether /usr/local/bin/gfortran accepts -g... yes
> checking for g++... g++
> checking whether we are using the GNU C++ compiler... yes
> checking whether g++ accepts -g... yes
> checking how to run the C++ preprocessor... g++ -E
> checking whether __attribute__((visibility())) is supported... no
> checking whether gcc accepts -fvisibility... yes
> checking whether /usr/local/bin/gfortran accepts -fvisibility... yes
> checking for gcc... gcc
> checking whether we are using the GNU Objective C compiler... yes
> checking whether gcc accepts -g... yes
> checking for Objective C++ compiler... trying some possibilities
> checking whether g++ can compile ObjC++... yes
> g++
> checking for a sed that does not truncate output... (cached) /usr/
> bin/sed
> checking for fgrep... /usr/bin/grep -F
> checking for ld used by gcc... /usr/bin/ld
> checking if the linker (/usr/bin/ld) is GNU ld... no
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -p
> checking the name lister (/usr/bin/nm -p) interface... BSD nm
> checking the maximum length of command line arguments... 196608
> checking whether the shell understands some XSI constructs... yes
> checking whether the shell understands "+="... no
> checking for /usr/bin/ld option to reload object files... -r
> checking for objdump... no
> checking how to recognize dependent libraries... pass_all
> checking for strip... strip
> checking for ranlib... ranlib
> checking command to parse /usr/bin/nm -p output from gcc object... ok
> checking for dsymutil... dsymutil
> checking for nmedit... nmedit
> checking for lipo... lipo
> checking for otool... otool
> checking for otool64... otool64
> checking for -single_module linker flag... yes
> checking for -exported_symbols_list linker flag... yes
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking for dlfcn.h... yes
> checking whether we are using the GNU C++ compiler... (cached) yes
> checking whether g++ accepts -g... (cached) yes
> checking how to run the C++ preprocessor... g++ -E
> checking whether we are using the GNU Fortran 77 compiler...
> (cached) yes
> checking whether /usr/local/bin/gfortran accepts -g... (cached) yes
> checking for objdir... .libs
> checking if gcc supports -fno-rtti -fno-exceptions... no
> checking for gcc option to produce PIC... -fno-common -DPIC
> checking if gcc PIC flag -fno-common -DPIC works... yes
> checking if gcc static flag -static works... no
> checking if gcc supports -c -o file.o... yes
> checking if gcc supports -c -o file.o... (cached) yes
> checking whether the gcc linker (/usr/bin/ld) supports shared
> libraries... yes
> checking dynamic linker characteristics... darwin8.11.1 dyld
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... no
> checking for ld used by g++... /usr/bin/ld
> checking if the linker (/usr/bin/ld) is GNU ld... no
> checking whether the g++ linker (/usr/bin/ld) supports shared
> libraries... yes
> checking for g++ option to produce PIC... -fno-common -DPIC
> checking if g++ PIC flag -fno-common -DPIC works... yes
> checking if g++ static flag -static works... no
> checking if g++ supports -c -o file.o... yes
> checking if g++ supports -c -o file.o... (cached) yes
> checking whether the g++ linker (/usr/bin/ld) supports shared
> libraries... yes
> checking dynamic linker characteristics... darwin8.11.1 dyld
> checking how to hardcode library paths into programs... immediate
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... no
> checking for /usr/local/bin/gfortran option to produce PIC... -fno-
> common
> checking if /usr/local/bin/gfortran PIC flag -fno-common works... yes
> checking if /usr/local/bin/gfortran static flag -static works... no
> checking if /usr/local/bin/gfortran supports -c -o file.o... yes
> checking if /usr/local/bin/gfortran supports -c -o file.o...
> (cached) yes
> checking whether the /usr/local/bin/gfortran linker (/usr/bin/ld)
> supports shared libraries... yes
> checking dynamic linker characteristics... darwin8.11.1 dyld
> checking how to hardcode library paths into programs... immediate
> checking for sin in -lm... yes
> checking for library containing dlopen... none required
> checking readline/history.h usability... yes
> checking readline/history.h presence... yes
> checking for readline/history.h... yes
> checking readline/readline.h usability... yes
> checking readline/readline.h presence... yes
> checking for readline/readline.h... yes
> checking for rl_callback_read_char in -lreadline... yes
> checking for history_truncate_file... no
> checking whether rl_completion_matches exists and is declared... no
> checking for ANSI C header files... (cached) yes
> checking whether time.h and sys/time.h may both be included... yes
> checking for dirent.h that defines DIR... yes
> checking for library containing opendir... none required
> checking for sys/wait.h that is POSIX.1 compatible... yes
> checking arpa/inet.h usability... yes
> checking arpa/inet.h presence... yes
> checking for arpa/inet.h... yes
> checking dl.h usability... no
> checking dl.h presence... no
> checking for dl.h... no
> checking for dlfcn.h... (cached) yes
> checking elf.h usability... no
> checking elf.h presence... no
> checking for elf.h... no
> checking fcntl.h usability... yes
> checking fcntl.h presence... yes
> checking for fcntl.h... yes
> checking floatingpoint.h usability... no
> checking floatingpoint.h presence... no
> checking for floatingpoint.h... no
> checking fpu_control.h usability... no
> checking fpu_control.h presence... no
> checking for fpu_control.h... no
> checking glob.h usability... yes
> checking glob.h presence... yes
> checking for glob.h... yes
> checking grp.h usability... yes
> checking grp.h presence... yes
> checking for grp.h... yes
> checking limits.h usability... yes
> checking limits.h presence... yes
> checking for limits.h... yes
> checking locale.h usability... yes
> checking locale.h presence... yes
> checking for locale.h... yes
> checking netdb.h usability... yes
> checking netdb.h presence... yes
> checking for netdb.h... yes
> checking netinet/in.h usability... yes
> checking netinet/in.h presence... yes
> checking for netinet/in.h... yes
> checking pwd.h usability... yes
> checking pwd.h presence... yes
> checking for pwd.h... yes
> checking stdbool.h usability... yes
> checking stdbool.h presence... yes
> checking for stdbool.h... yes
> checking for strings.h... (cached) yes
> checking sys/param.h usability... yes
> checking sys/param.h presence... yes
> checking for sys/param.h... yes
> checking sys/select.h usability... yes
> checking sys/select.h presence... yes
> checking for sys/select.h... yes
> checking sys/socket.h usability... yes
> checking sys/socket.h presence... yes
> checking for sys/socket.h... yes
> checking for sys/stat.h... (cached) yes
> checking sys/resource.h usability... yes
> checking sys/resource.h presence... yes
> checking for sys/resource.h... yes
> checking sys/time.h usability... yes
> checking sys/time.h presence... yes
> checking for sys/time.h... yes
> checking sys/times.h usability... yes
> checking sys/times.h presence... yes
> checking for sys/times.h... yes
> checking sys/utsname.h usability... yes
> checking sys/utsname.h presence... yes
> checking for sys/utsname.h... yes
> checking time.h usability... yes
> checking time.h presence... yes
> checking for time.h... yes
> checking for unistd.h... (cached) yes
> checking errno.h usability... yes
> checking errno.h presence... yes
> checking for errno.h... yes
> checking for inttypes.h... (cached) yes
> checking stdarg.h usability... yes
> checking stdarg.h presence... yes
> checking for stdarg.h... yes
> checking for stdint.h... (cached) yes
> checking for string.h... (cached) yes
> checking whether setjmp.h is POSIX.1 compatible... yes
> checking whether sigsetjmp is declared... yes
> checking whether siglongjmp is declared... yes
> checking for GNU C library with version >= 2... no
> checking return type of signal handlers... void
> checking for pid_t... yes
> checking for size_t... yes
> checking whether SIZE_MAX is declared... yes
> checking for blkcnt_t... yes
> checking for type of socket length... socklen_t *
> checking for stack_t... yes
> checking for intptr_t... yes
> checking for uintptr_t... yes
> checking whether byte ordering is bigendian... no
> checking for an ANSI C-conforming const... yes
> checking for gcc option to accept ISO C99... -std=gnu99
> checking for gcc -std=gnu99 option to accept ISO Standard C...
> (cached) -std=gnu99
> checking for inline... inline
> checking for int... yes
> checking size of int... 4
> checking for long... yes
> checking size of long... 4
> checking for long long... yes
> checking size of long long... 8
> checking for double... yes
> checking size of double... 8
> checking for long double... yes
> checking size of long double... 16
> checking for size_t... (cached) yes
> checking size of size_t... 4
> checking whether we can compute C Make dependencies... yes, using
> gcc -std=gnu99 -MM
> checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
> checking how to get verbose linking output from /usr/local/bin/
> gfortran... -v
> checking for Fortran 77 libraries of /usr/local/bin/gfortran... -L/
> usr/local/lib -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -L/usr/
> local/lib/gcc/i686-apple-darwin8/4.2.3/../../.. -lgfortranbegin -
> lgfortran
> checking how to get verbose linking output from gcc -std=gnu99... -v
> checking for C libraries of gcc -std=gnu99... -L/usr/local/lib -L/
> usr/lib/gcc/i686-apple-darwin8/4.0.1 -L/usr/lib/gcc/i686-apple-
> darwin8/4.0.1/../../.. -lgcc_s.10.4 -lSystem
> checking for dummy main to link with Fortran 77 libraries... none
> checking for Fortran 77 name-mangling scheme... lower case,
> underscore, no extra underscore
> checking whether /usr/local/bin/gfortran appends underscores to
> external names... yes
> checking whether /usr/local/bin/gfortran appends extra underscores
> to external names... no
> checking whether mixed C/Fortran code can be run... yes
> checking whether /usr/local/bin/gfortran and gcc -std=gnu99 agree on
> int and double... yes
> checking whether /usr/local/bin/gfortran and gcc -std=gnu99 agree on
> double complex... yes
> checking whether g++ accepts -M for generating dependencies... yes
> checking whether we can compute ObjC Make dependencies... yes, using
> gcc -MM
> checking for ObjC runtime library... -lobjc
> checking for ObjC runtime style... next
> checking for cached Foundation settings... no
> checking whether default Foundation framework works... no
> checking whether -framework Foundation works... yes
> checking for working Foundation implementation... yes
> checking whether C runtime needs -D__NO_MATH_INLINES... no
> checking for xmkmf... /usr/X11R6/bin/xmkmf
> checking whether linker supports dynamic lookup... yes
> checking for off_t... yes
> checking for working alloca.h... yes
> checking for alloca... yes
> checking whether alloca is declared... yes
> checking whether expm1 exists and is declared... yes
> checking whether hypot exists and is declared... yes
> checking whether log1p exists and is declared... yes
> checking whether log2 exists and is declared... yes
> checking whether log10 exists and is declared... yes
> checking whether rint exists and is declared... yes
> checking for fseeko... yes
> checking for ftello... yes
> checking for isblank... yes
> checking for matherr... yes
> checking whether fcntl exists and is declared... yes
> checking whether getgrgid exists and is declared... yes
> checking whether getpwuid exists and is declared... yes
> checking whether sigaction exists and is declared... yes
> checking whether sigaltstack exists and is declared... yes
> checking whether sigemptyset exists and is declared... yes
> checking whether va_copy exists and is declared... yes
> checking whether __va_copy exists and is declared... yes
> checking whether fdopen exists and is declared... yes
> checking whether popen exists and is declared... yes
> checking whether setenv exists and is declared... yes
> checking whether system exists and is declared... yes
> checking whether unsetenv exists and is declared... yes
> checking whether strcoll exists and is declared... yes
> checking whether getrlimit exists and is declared... yes
> checking whether getrusage exists and is declared... yes
> checking whether chmod exists and is declared... yes
> checking whether mkfifo exists and is declared... yes
> checking whether stat exists and is declared... yes
> checking whether umask exists and is declared... yes
> checking whether gettimeofday exists and is declared... yes
> checking whether times exists and is declared... yes
> checking whether time exists and is declared... yes
> checking whether access exists and is declared... yes
> checking whether chdir exists and is declared... yes
> checking whether execv exists and is declared... yes
> checking whether ftruncate exists and is declared... yes
> checking whether getcwd exists and is declared... yes
> checking whether getuid exists and is declared... yes
> checking whether readlink exists and is declared... yes
> checking whether symlink exists and is declared... yes
> checking whether sysconf exists and is declared... yes
> checking for putenv... yes
> checking whether putenv is declared... yes
> checking for vasprintf... yes
> checking whether vasprintf is declared... yes
> checking for mempcpy... no
> checking for realpath... yes
> checking whether realpath is declared... yes
> checking whether glob exists and is declared... yes
> checking for isnan... yes
> checking whether isfinite is declared... yes
> checking whether isnan is declared... yes
> checking whether you have IEEE 754 floating-point arithmetic... yes
> checking whether putenv("FOO") can unset an environment variable... no
> checking whether putenv("FOO=") can unset an environment variable...
> no
> checking for nl_langinfo and CODESET... yes
> checking for acosh... yes
> checking for asinh... yes
> checking for atanh... yes
> checking for mkdtemp... yes
> checking for snprintf... yes
> checking for strdup... yes
> checking for strncasecmp... yes
> checking for vsnprintf... yes
> checking whether acosh is declared... yes
> checking whether asinh is declared... yes
> checking whether atanh is declared... yes
> checking whether mkdtemp is declared... yes
> checking whether snprintf is declared... yes
> checking whether strdup is declared... yes
> checking whether strncasecmp is declared... yes
> checking whether vsnprintf is declared... yes
> checking for library containing connect... none required
> checking for library containing gethostbyname... none required
> checking for library containing xdr_string... none required
> checking for __setfpucw... no
> checking for working calloc... yes
> checking for working isfinite... yes
> checking for working log1p... yes
> checking whether ftell works correctly on files opened for append...
> yes
> checking for working sigaction... yes
> checking whether mktime sets errno... no
> checking whether C99 double complex is supported...
> checking complex.h usability... yes
> checking complex.h presence... yes
> checking for complex.h... yes
> checking for double complex... yes
> checking whether cexp exists and is declared... yes
> checking whether clog exists and is declared... yes
> checking whether csqrt exists and is declared... yes
> checking whether cpow exists and is declared... yes
> checking whether ccos exists and is declared... yes
> checking whether csin exists and is declared... yes
> checking whether ctan exists and is declared... yes
> checking whether cacos exists and is declared... yes
> checking whether casin exists and is declared... yes
> checking whether catan exists and is declared... yes
> checking whether ccosh exists and is declared... yes
> checking whether csinh exists and is declared... yes
> checking whether ctanh exists and is declared... yes
> checking whether cacosh exists and is declared... yes
> checking whether casinh exists and is declared... yes
> checking whether catanh exists and is declared... yes
> checking whether C99 double complex is compatible with Rcomplex... yes
> yes
> checking for cblas_cdotu_sub in vecLib framework... -framework vecLib
> checking for dgemm_ in -framework vecLib... yes
> checking whether double complex BLAS can be used... yes
> checking whether the BLAS is complete... yes
> checking iconv.h usability... yes
> checking iconv.h presence... yes
> checking for iconv.h... yes
> checking for iconv... in libiconv
> checking whether iconv accepts "UTF-8", "latin1" and "UCS-*"... yes
> checking for iconvlist... yes
> checking wchar.h usability... yes
> checking wchar.h presence... yes
> checking for wchar.h... yes
> checking wctype.h usability... yes
> checking wctype.h presence... yes
> checking for wctype.h... yes
> checking whether mbrtowc exists and is declared... yes
> checking whether wcrtomb exists and is declared... yes
> checking whether wcscoll exists and is declared... yes
> checking whether wcsftime exists and is declared... yes
> checking whether wcstod exists and is declared... yes
> checking whether mbstowcs exists and is declared... yes
> checking whether wcstombs exists and is declared... yes
> checking whether wctrans exists and is declared... yes
> checking whether iswblank exists and is declared... yes
> checking whether wctype exists and is declared... yes
> checking whether iswctype exists and is declared... yes
> checking for wctrans_t... yes
> checking for mbstate_t... yes
> checking for ICU... no
> checking for ucol_open in -licucore... yes
> checking for X... libraries /usr/X11R6/lib, headers /usr/X11R6/include
> checking whether -R must be followed by a space... neither works
> checking for gethostbyname... yes
> checking for connect... yes
> checking for remove... yes
> checking for shmat... yes
> checking for IceConnectionNumber in -lICE... yes
> checking X11/Intrinsic.h usability... yes
> checking X11/Intrinsic.h presence... yes
> checking for X11/Intrinsic.h... yes
> checking for XtToolkitInitialize in -lXt... yes
> using X11 ... yes
> checking for KeySym... yes
> checking X11/Xmu/Atoms.h usability... yes
> checking X11/Xmu/Atoms.h presence... yes
> checking for X11/Xmu/Atoms.h... yes
> checking for XmuInternAtom in -lXmu... yes
> configure: not checking for cairo as pkg-config is not present
> checking for CFStringGetSystemEncoding in CoreFoundation
> framework... -framework CoreFoundation
> checking for tclConfig.sh... no
> checking for tclConfig.sh in library (sub)directories... /usr/local/
> lib/tclConfig.sh
> checking for tkConfig.sh... no
> checking for tkConfig.sh in library (sub)directories... /usr/local/
> lib/tkConfig.sh
> checking tcl.h usability... yes
> checking tcl.h presence... yes
> checking for tcl.h... yes
> checking tk.h usability... yes
> checking tk.h presence... yes
> checking for tk.h... yes
> checking whether compiling/linking Tcl/Tk code works... yes
> checking for BSD networking... yes
> checking if jpeglib version >= 6b... no
> checking for main in -lz... yes
> checking if libpng version >= 1.0.5... no
> checking rpc/types.h usability... yes
> checking rpc/types.h presence... yes
> checking for rpc/types.h... yes
> checking for rpc/xdr.h... yes
> checking for XDR support... yes
> checking whether zlib support needs to be compiled... yes
> checking mmap support for zlib... yes
> checking whether bzip2 support needs to be compiled... yes
> checking for lzma_version_number in -llzma... no
> checking whether PCRE support needs to be compiled... yes
> checking tiffio.h usability... no
> checking tiffio.h presence... no
> checking for tiffio.h... no
> checking for TIFFOpen in -ltiff... no
> checking whether leap seconds are treated according to POSIX... yes
> checking for setitimer... yes
> checking for special C compiler options needed for large files... no
> checking for _FILE_OFFSET_BITS value needed for large files... no
> checking for _LARGEFILE_SOURCE value needed for large files... no
> checking whether KERN_USRSTACK sysctl is supported... yes
> checking for lpr... lpr
> checking for paperconf... false
> checking for java... /usr/bin/java
> checking for javac... /usr/bin/javac
> checking for javah... /usr/bin/javah
> checking for jar... /usr/bin/jar
> checking whether Java compiler works... yes
> checking whether Java compiler works for version 1.4... yes
> checking whether Java interpreter works... yes
> checking Java environment... /System/Library/Frameworks/
> JavaVM.framework/Versions/1.5.0/Home
> checking for cached Java settings... no
> checking whether JNI programs can be compiled... yes
> checking for gfortran... gfortran
> checking whether we are using the GNU Fortran compiler... yes
> checking whether gfortran accepts -g... yes
> checking whether we are using the GNU Fortran compiler... (cached) yes
> checking whether gfortran accepts -g... (cached) yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... no
> checking for gfortran option to produce PIC... -fno-common
> checking if gfortran PIC flag -fno-common works... yes
> checking if gfortran static flag -static works... no
> checking if gfortran supports -c -o file.o... yes
> checking if gfortran supports -c -o file.o... (cached) yes
> checking whether the gfortran linker (/usr/bin/ld) supports shared
> libraries... yes
> checking dynamic linker characteristics... darwin8.11.1 dyld
> checking how to hardcode library paths into programs... immediate
> checking for Fortran flag to compile .f90 files... none
> checking for Fortran flag to compile .f95 files... none
> checking for recommended packages... yes
> checking whether NLS is requested... yes
> checking whether make sets $(MAKE)... yes
> checking for a thread-safe mkdir -p... tools/install-sh -c -d
> checking for msgfmt... /usr/local/bin/msgfmt
> checking for gmsgfmt... /usr/local/bin/msgfmt
> checking for xgettext... ./configure: line 58405: 8465 Trace/BPT
> trap $ac_dir/$ac_word --omit-header --copyright-holder= --
> msgid-bugs-address= /dev/null 1>&5 2>&1
> no
> checking for msgmerge... /usr/local/bin/msgmerge
> checking whether we are using the GNU C Library 2 or newer... no
> checking for ranlib... (cached) ranlib
> checking for simple visibility declarations... yes
> checking for inline... inline
> checking for stdint.h... yes
> checking for stdlib.h... (cached) yes
> checking for unistd.h... (cached) yes
> checking for getpagesize... yes
> checking for working mmap... yes
> checking whether integer division by zero raises SIGFPE... yes
> checking for inttypes.h... yes
> checking for unsigned long long int... yes
> checking for inttypes.h... (cached) yes
> checking whether the inttypes.h PRIxNN macros are broken... no
> checking whether imported symbols can be declared weak... no
> checking for multithread API to use... none
> checking argz.h usability... no
> checking argz.h presence... no
> checking for argz.h... no
> checking for inttypes.h... (cached) yes
> checking for limits.h... (cached) yes
> checking for unistd.h... (cached) yes
> checking for sys/param.h... (cached) yes
> checking for getcwd... yes
> checking for getegid... yes
> checking for geteuid... yes
> checking for getgid... yes
> checking for getuid... yes
> checking for mempcpy... (cached) no
> checking for munmap... yes
> checking for stpcpy... yes
> checking for strcasecmp... yes
> checking for strdup... (cached) yes
> checking for strtoul... yes
> checking for tsearch... yes
> checking for argz_count... no
> checking for argz_stringify... no
> checking for argz_next... no
> checking for __fsetlocking... no
> checking whether feof_unlocked is declared... yes
> checking whether fgets_unlocked is declared... no
> checking for iconv... yes
> checking for iconv declaration...
> extern size_t iconv (iconv_t cd, const char * *inbuf, size_t
> *inbytesleft, char * *outbuf, size_t *outbytesleft);
> checking for NL_LOCALE_NAME macro... no
> checking for bison... bison
> checking version of bison... 1.28, ok
> checking for long long int... yes
> checking for long double... yes
> checking for wchar_t... yes
> checking for wint_t... yes
> checking for intmax_t... yes
> checking whether printf() supports POSIX/XSI format strings... yes
> checking whether we are using the GNU C Library 2.1 or newer... no
> checking for stdint.h... (cached) yes
> checking for SIZE_MAX... yes
> checking for stdint.h... (cached) yes
> checking for CFPreferencesCopyAppValue... yes
> checking for CFLocaleCopyCurrent... yes
> checking for ptrdiff_t... yes
> checking stddef.h usability... yes
> checking stddef.h presence... yes
> checking for stddef.h... yes
> checking for stdlib.h... (cached) yes
> checking for string.h... (cached) yes
> checking for asprintf... yes
> checking for fwprintf... yes
> checking for putenv... (cached) yes
> checking for setenv... yes
> checking for setlocale... yes
> checking for snprintf... (cached) yes
> checking for wcslen... yes
> checking whether _snprintf is declared... no
> checking whether _snwprintf is declared... no
> checking whether getc_unlocked is declared... yes
> checking for nl_langinfo and CODESET... (cached) yes
> checking for LC_MESSAGES... yes
> checking for shared library run path origin... done
> checking for CFPreferencesCopyAppValue... (cached) yes
> checking for CFLocaleCopyCurrent... (cached) yes
> checking whether included gettext is requested... no
> checking for GNU gettext in libc... no
> checking for GNU gettext in libintl... yes
> checking whether to use NLS... yes
> checking where the gettext function comes from... external libintl
> checking how to link with libintl... -lintl -liconv -lc -Wl,-
> framework -Wl,CoreFoundation
> using as R_SHELL for scripts ... /bin/sh
> configure: creating ./config.status
> config.status: creating Makeconf
> config.status: creating Makefile
> config.status: creating doc/Makefile
> config.status: creating doc/html/Makefile
> config.status: creating doc/manual/Makefile
> config.status: creating etc/Makefile
> config.status: creating etc/Makeconf
> config.status: creating etc/Renviron
> config.status: creating etc/ldpaths
> config.status: creating m4/Makefile
> config.status: creating po/Makefile.in
> config.status: creating share/Makefile
> config.status: creating src/Makefile
> config.status: creating src/appl/Makefile
> config.status: creating src/extra/Makefile
> config.status: creating src/extra/blas/Makefile
> config.status: creating src/extra/bzip2/Makefile
> config.status: creating src/extra/intl/Makefile
> config.status: creating src/extra/pcre/Makefile
> config.status: creating src/extra/tre/Makefile
> config.status: creating src/extra/xdr/Makefile
> config.status: creating src/extra/xz/Makefile
> config.status: creating src/extra/zlib/Makefile
> config.status: creating src/include/Makefile
> config.status: creating src/include/Rmath.h0
> config.status: creating src/include/R_ext/Makefile
> config.status: creating src/library/Recommended/Makefile
> config.status: creating src/library/Makefile
> config.status: creating src/library/base/DESCRIPTION
> config.status: creating src/library/base/Makefile
> config.status: creating src/library/datasets/DESCRIPTION
> config.status: creating src/library/datasets/Makefile
> config.status: creating src/library/graphics/DESCRIPTION
> config.status: creating src/library/graphics/Makefile
> config.status: creating src/library/grDevices/DESCRIPTION
> config.status: creating src/library/grDevices/Makefile
> config.status: creating src/library/grDevices/src/Makefile
> config.status: creating src/library/grid/DESCRIPTION
> config.status: creating src/library/grid/Makefile
> config.status: creating src/library/grid/src/Makefile
> config.status: creating src/library/methods/DESCRIPTION
> config.status: creating src/library/methods/Makefile
> config.status: creating src/library/methods/src/Makefile
> config.status: creating src/library/profile/Makefile
> config.status: creating src/library/stats/DESCRIPTION
> config.status: creating src/library/stats/Makefile
> config.status: creating src/library/stats/src/Makefile
> config.status: creating src/library/stats4/DESCRIPTION
> config.status: creating src/library/stats4/Makefile
> config.status: creating src/library/splines/DESCRIPTION
> config.status: creating src/library/splines/Makefile
> config.status: creating src/library/splines/src/Makefile
> config.status: creating src/library/tcltk/DESCRIPTION
> config.status: creating src/library/tcltk/Makefile
> config.status: creating src/library/tcltk/src/Makefile
> config.status: creating src/library/tools/DESCRIPTION
> config.status: creating src/library/tools/Makefile
> config.status: creating src/library/tools/src/Makefile
> config.status: creating src/library/utils/DESCRIPTION
> config.status: creating src/library/utils/Makefile
> config.status: creating src/main/Makefile
> config.status: creating src/modules/Makefile
> config.status: creating src/modules/X11/Makefile
> config.status: creating src/modules/internet/Makefile
> config.status: creating src/modules/lapack/Makefile
> config.status: creating src/modules/vfonts/Makefile
> config.status: creating src/nmath/Makefile
> config.status: creating src/nmath/standalone/Makefile
> config.status: creating src/scripts/Makefile
> config.status: creating src/scripts/R.sh
> config.status: creating src/scripts/Rcmd
> config.status: creating src/scripts/Rdiff
> config.status: creating src/scripts/Rprof
> config.status: creating src/scripts/Sd2Rd
> config.status: creating src/scripts/build
> config.status: creating src/scripts/check
> config.status: creating src/scripts/f77_f2c
> config.status: creating src/scripts/mkinstalldirs
> config.status: creating src/scripts/pager
> config.status: creating src/unix/Makefile
> config.status: creating tests/Makefile
> config.status: creating tests/Embedding/Makefile
> config.status: creating tests/Examples/Makefile
> config.status: creating tests/Native/Makefile
> config.status: creating tools/Makefile
> config.status: creating src/include/config.h
> config.status: executing libtool commands
> config.status: executing po-directories commands
> config.status: creating po/POTFILES
> config.status: creating po/Makefile
> config.status: executing stamp-h commands
>
> R is now configured for i386-apple-darwin8.11.1
>
> Source directory: .
> Installation directory: /Library/Frameworks
>
> C compiler: gcc -std=gnu99 -g -O2
> Fortran 77 compiler: /usr/local/bin/gfortran -g -O2
>
> C++ compiler: g++ -g -O2
> Fortran 90/95 compiler: gfortran -g -O2
> Obj-C compiler: gcc -g -O2
>
> Interfaces supported: X11, aqua, tcltk
> External libraries: readline, BLAS(vecLib), ICU
> Additional capabilities: NLS
> Options enabled: framework, R profiling, Java
>
> Recommended packages: yes
>
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
>
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