[R-SIG-Mac] Unable to install latest version of package lme4 on mac ox (snow leopard)

[Simon Urbanek]

On Sep 21, 2009, at 8:23 AM, Dale Steele wrote:

> I've been unable to install the latest -31 binary version of lme4  
> (-28 installs)

-31 doesn't pass make check hence it's not available.


>  or compile from source from CRAN.  Any suggestions on how do make  
> this work?

Install the current R 2.9.2 binary from
http://r.research.att.com/
(top of the page)
For details read this mailing list.

Cheers,
Simon


>  Thanks.  --Dale
>
> [R.app GUI 1.29 (5483) x86_64-apple-darwin9.8.0]
>
> trying URL '
> http://www.revolution-computing.com/cran/src/contrib/lme4_0.999375-31.tar.gz
> '
> Content type 'application/x-gzip' length 839548 bytes (819 Kb)
> opened URL
> ==================================================
> downloaded 819 Kb
>
> * Installing *source* package ‘lme4’ ...
> ** libs
> ** arch - i386
> gcc-4.2 -arch i386 -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/i386
> -I/usr/local/include
> -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/ 
> Matrix/include"
> -I"/Library/Frameworks/R.framework/Resources/library/stats/include"
> <snip> .....
>
> ** arch - ppc64
> gcc-4.2 -arch ppc64 -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc64
> -I/usr/local/include
> -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/ 
> Matrix/include"
> -I"/Library/Frameworks/R.framework/Resources/library/stats/ 
> include"   -fPIC
> -g -O2 -c init.c -o init.o
> gcc-4.2 -arch ppc64 -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc64
> -I/usr/local/include
> -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/ 
> Matrix/include"
> -I"/Library/Frameworks/R.framework/Resources/library/stats/ 
> include"   -fPIC
> -g -O2 -c lmer.c -o lmer.o
> gcc-4.2 -arch ppc64 -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc64
> -I/usr/local/include
> -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/ 
> Matrix/include"
> -I"/Library/Frameworks/R.framework/Resources/library/stats/ 
> include"   -fPIC
> -g -O2 -c local_stubs.c -o local_stubs.o
> gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,- 
> headerpad_max_install_names
> -undefined dynamic_lookup -single_module -multiply_defined suppress
> -L/usr/local/lib -o lme4.so init.o lmer.o local_stubs.o
> -L/Library/Frameworks/R.framework/Resources/lib/ppc64 -lRlapack
> -L/Library/Frameworks/R.framework/Resources/lib/ppc64 -lRblas - 
> lgfortran
> -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R
> -Wl,-framework -Wl,CoreFoundation
> ld: warning: in /usr/lib/dylib1.10.5.o, missing required  
> architecture ppc64
> in file
> ld: warning: in /usr/lib/libSystemStubs.a, missing required  
> architecture
> ppc64 in file
> ld: warning: in
> /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation,  
> missing
> required architecture ppc64 in file
> ld: warning: in /usr/lib/libSystem.dylib, missing required  
> architecture
> ppc64 in file
> ld: in /usr/lib/libSystem.B.dylib, missing required architecture  
> ppc64 in
> file
> collect2: ld returned 1 exit status
> make: *** [lme4.so] Error 1
> ERROR: compilation failed for package ‘lme4’
> * Removing
> ‘/Library/Frameworks/R.framework/Versions/2.9/Resources/library/lme4’
> * Restoring previous
> ‘/Library/Frameworks/R.framework/Versions/2.9/Resources/library/lme4’
>
> The downloaded packages are in
>
> ‘/private/var/folders/2E/2EHMWUzSEVmmbPrLUWgh0E+++TI/-Tmp-/ 
> RtmpBl0sui/downloaded_packages’
>> sessionInfo()
> R version 2.9.2 Patched (2009-09-19 r49761)
> x86_64-apple-darwin9.8.0
>
> locale:
> en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_2.9.2
> Warning message:
> In install.packages(c("lme4"), lib =
> "/Library/Frameworks/R.framework/Resources/library/",  :
>  installation of package 'lme4' had non-zero exit status
>>
>
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