[R-SIG-Mac] question about installing from source

[Simon Urbanek]

Roger,

On Oct 21, 2009, at 9:04 , Roger Koenker wrote:

> worked for me on a SL machine

yes, but you're using 64-bit R, however, Mark used 32-bit (look at his  
"arch" in the output and yours) -- that's the difference. Dynamic or  
static plays no role (in fact static has usually better performance)  
-- the only important part is --with-pic (on some archs).

Cheers,
Simon


> after I reinstalled fftw3 using
> ./configure --enable-shared as suggested by Duncan.  Here is
> the configure output, in case it would help:
>
> * installing to library '/Library/Frameworks/R.framework/Resources/ 
> library'
> * installing *source* package 'Rcartogram' ...
> checking for pkg-config... no
> Looking for fftw3 files in /usr/local
> checking for gcc... gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ANSI C... none needed
> Can compile with fftw3.h
> checking for fftw_malloc in -lfftw3... yes
> Trying to link against libfftw3
> Can link against libfftw3
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> ** arch - x86_64
> gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/ 
> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
> include/x86_64 -I/usr/local/include/ -DNOPROGRESS -I/usr/local/ 
> include    -fPIC  -g -O2 -c Rcart.c -o Rcart.o
> gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/ 
> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
> include/x86_64 -I/usr/local/include/ -DNOPROGRESS -I/usr/local/ 
> include    -fPIC  -g -O2 -c cart.c -o cart.o
> gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,- 
> headerpad_max_install_names -undefined dynamic_lookup -single_module  
> -multiply_defined suppress -L/usr/local/lib -o Rcartogram.so Rcart.o  
> cart.o -L/usr/local/lib -lfftw3 -lfftw3 -F/Library/Frameworks/ 
> R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
>
> url:    www.econ.uiuc.edu/~roger            Roger Koenker
> email    rkoenker at uiuc.edu            Department of Economics
> vox:     217-333-4558                University of Illinois
> fax:       217-244-6678                Urbana, IL 61801
>
> On Oct 20, 2009, at 10:44 PM, Mark Daniel Ward wrote:
>
>> I am trying to install the Rcartogram library.  I've never had  
>> trouble doing
>> this before, but I recently upgraded to Snow Leopard, which may be  
>> causing a
>> problem.  I do have FFTW3 installed on my machine, and I've never  
>> had trouble
>> with it before either.  I even tried installing FFTW3 again, but  
>> this did not
>> seem to fix the problem.
>>
>> Here is the error I get when trying to install the Rcartogram  
>> library from
>> Omegahat.  If anyone has any suggestions, I would really appreciate  
>> it.
>>
>> #######################################################################
>>
>>> install.packages("Rcartogram", repos="http://www.omegahat.org/R/",
>> type="source")
>> trying URL 'http://www.omegahat.org/R/src/contrib/Rcartogram_0.2-2.tar.gz'
>> Content type 'application/x-gzip' length 123576 bytes (120 Kb)
>> opened URL
>> ==================================================
>> downloaded 120 Kb
>>
>> * Installing *source* package ‘Rcartogram’ ...
>> checking for pkg-config... no
>> Looking for fftw3 files in /usr/local
>> checking for gcc... gcc
>> checking for C compiler default output file name... a.out
>> checking whether the C compiler works... yes
>> checking whether we are cross compiling... no
>> checking for suffix of executables...
>> checking for suffix of object files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether gcc accepts -g... yes
>> checking for gcc option to accept ANSI C... none needed
>> Can compile with fftw3.h
>> checking for fftw_malloc in -lfftw3... yes
>> Trying to link against libfftw3
>> Can link against libfftw3
>> configure: creating ./config.status
>> config.status: creating src/Makevars
>> ** libs
>> ** arch - i386
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>> Resources/include -
>> I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/ 
>> local/include/ -
>> DNOPROGRESS -I/usr/local/include    -fPIC  -g -O2 -c Rcart.c -o  
>> Rcart.o
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>> Resources/include -
>> I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/ 
>> local/include/ -
>> DNOPROGRESS -I/usr/local/include    -fPIC  -g -O2 -c cart.c -o cart.o
>> gcc -arch i386 -std=gnu99 -dynamiclib -Wl,- 
>> headerpad_max_install_names -mmacosx-
>> version-min=10.4 -undefined dynamic_lookup -single_module - 
>> multiply_defined
>> suppress -L/usr/local/lib -o Rcartogram.so Rcart.o cart.o -L/usr/ 
>> local/lib -
>> lfftw3 -lfftw3 -F/Library/Frameworks/R.framework/.. -framework R - 
>> Wl,-framework
>> -Wl,CoreFoundation
>> ld: warning: in /usr/local/lib/libfftw3.a, file is not of required  
>> architecture
>> ld: warning: duplicate dylib /usr/local/lib/libgcc_s.1.dylib
>> ** R
>> ** data
>> ** demo
>> ** preparing package for lazy loading
>> ** help
>> *** installing help indices
>>>>> Building/Updating help pages for package 'Rcartogram'
>>    Formats: text html latex example
>> addBoundary                       text    html    latex   example
>> cartogram                         text    html    latex   example
>> uspop                             text    html    latex   example
>> ** building package indices ...
>> * DONE (Rcartogram)
>>
>> The downloaded packages are in
>> 	‘/private/var/folders/bP/bPCSLe+IHZab-XXPI9KflE+++TM/-Tmp-
>> /RtmpZhzOMh/downloaded_packages’
>> Updating HTML index of packages in '.Library'
>>
>> _______________________________________________
>> R-SIG-Mac mailing list
>> R-SIG-Mac at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
>