[R-SIG-Mac] R package install (spp_1.7.tar.gz) problem

[Steve Lianoglou]

Hi,

On Nov 4, 2009, at 11:34 AM, Yonwoo Jung wrote:

> I'm trying to install spp_1.7.tar.gz package.
> I always go this error message : bed2vector.C:13:31:
> boost/tokenizer.hpp: No such file or directory.
>
> If anyone could suggest it will be a great help.
>
>  Below is more detail message.
>
> * installing to library Œ/Users/yonwoo/Library/R/2.10/library‚
> * installing *source* package Œspp‚ ...
> ** libs
> ** arch - i386
> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/
> Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/
> include   -D_FASTMAP -DMAQ_LONGREADS	 -fPIC  -g -O2 -c bed2vector.C -o
> bed2vector.o
> In file included from /usr/include/c++/4.0.0/backward/strstream:51,
>                  from bed2vector.C:7:
> /usr/include/c++/4.0.0/backward/backward_warning.h:32:2: warning:
> #warning This file includes at least one deprecated or antiquated
> header. Please consider using one of the 32 headers found in section
> 17.4.1.2 of the C++ standard. Examples include substituting the <X>
> header for the <X.h> header for C++ includes, or <iostream> instead of
> the deprecated header <iostream.h>. To disable this warning use -Wno-
> deprecated.
> bed2vector.C:13:31: error: boost/tokenizer.hpp: No such file or
> directory

I can't find the package in order to help and try this out, but it  
looks as if you just need to get the boost libraries:

http://www.boost.org/
http://www.boost.org/doc/libs/1_40_0/more/getting_started/unix-variants.html

Just make sure that the library is in your compiler's include path.

-steve

--
Steve Lianoglou
Graduate Student: Computational Systems Biology
   |  Memorial Sloan-Kettering Cancer Center
   |  Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact