[R-SIG-Mac] problematic MACOSX_DEPLOYMENT_TARGET

[Simon Urbanek]

Christoph,

please make sure you have:
- Xcode 2.4 or higher installed (2.5 recommended)
- you are using Apple's compilers
- MACOSX_DEPLOYMENT_TARGET is not explicitly set (e.g. try  
Sys.getenv("MACOSX_DEPLOYMENT_TARGET"))

If all the above is true, please send me the output in Terminal:
which gcc
gcc --version

then try
Sys.setenv("MACOSX_DEPLOYMENT_TARGET"="10.4")
before installing a package from source.

Thanks,
Simon


On Oct 22, 2008, at 5:33 , Christoph Heibl wrote:

> Dear list,
>
> after having installed R-2.8.0 on Mac OS 10.4.11, I get an error  
> message when I try to install the source of a package (please see  
> below). I was trying to find a solution on the web, but my  
> understanding of the architecture of Mac OS is to weak to make  
> something out of the hints I found. Can someone point me towards an  
> easy-understandable solution to the problem? What do I have to  
> change exactly and how can I do it?
>
> Thank you in advance!
> Christoph Heibl
>
> # The problem ...
> # trying to install 'gee'
>
> > install.packages("gee", type = "source")
> trying URL 'http://cran.miroir-francais.fr/src/contrib/gee_4.13-13.tar.gz'
> Content type 'application/x-gzip' length 50101 bytes (48 Kb)
> opened URL
> ==================================================
> downloaded 48 Kb
>
> WARNING: ignoring environment value of R_HOME
> * Installing *source* package 'gee' ...
> ** libs
> ** arch - i386
> gfortran -arch i386   -fPIC  -g -O2 -c dgedi.f -o dgedi.o
> gfortran -arch i386   -fPIC  -g -O2 -c dgefa.f -o dgefa.o
> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
> include/i386  -I/usr/local/include    -fPIC  -g -O2 -c ugee.c -o  
> ugee.o
> gcc -arch i386 -std=gnu99 -dynamiclib -Wl,- 
> headerpad_max_install_names  -undefined dynamic_lookup - 
> single_module -multiply_defined suppress -L/usr/local/lib -o gee.so  
> dgedi.o dgefa.o ugee.o -L/Library/Frameworks/R.framework/Resources/ 
> lib/i386 -lRblas -lgfortran -lgfortran -F/Library/Frameworks/ 
> R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
> ** arch - ppc
> gfortran -arch ppc   -fPIC  -g -O2 -c dgedi.f -o dgedi.o
> gfortran -arch ppc   -fPIC  -g -O2 -c dgefa.f -o dgefa.o
> gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/ 
> include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/ 
> usr/local/include    -fPIC  -g -O2 -c ugee.c -o ugee.o
> gcc -arch ppc -std=gnu99 -dynamiclib -Wl,- 
> headerpad_max_install_names  -undefined dynamic_lookup - 
> single_module -multiply_defined suppress -L/usr/local/lib -o gee.so  
> dgedi.o dgefa.o ugee.o -L/Library/Frameworks/R.framework/Resources/ 
> lib/ppc -lRblas -lgfortran -lSystemStubs -lgfortran -lSystemStubs -F/ 
> Library/Frameworks/R.framework/.. -framework R -Wl,-framework - 
> Wl,CoreFoundation
> ld: flag: -undefined dynamic_lookup can't be used with  
> MACOSX_DEPLOYMENT_TARGET environment variable set to: 10.1
> /usr/libexec/gcc/powerpc-apple-darwin8/4.0.1/libtool: internal link  
> edit command failed
> make: *** [gee.so] Error 1
> chmod: /Library/Frameworks/R.framework/Versions/2.8/Resources/ 
> library/gee/libs/ppc/*: No such file or directory
> ERROR: compilation failed for package 'gee'
> ** Removing '/Library/Frameworks/R.framework/Versions/2.8/Resources/ 
> library/gee'
>
> The downloaded packages are in
> 	/private/tmp/RtmpH8ykpZ/downloaded_packages
> Updating HTML index of packages in '.Library'
> Warning message:
> In install.packages("gee", type = "source") :
>  installation of package 'gee' had non-zero exit status
>
>
> ________________________________________________________
>
> Christoph Heibl
>
> Systematic Botany
> Ludwig-Maximilians-Universität München
> Menzinger Str. 67
> D-80638 München
> GERMANY
>
> phone:     +49-(0)89-17861-251
> e-mail:    heibl at lmu.de
>
> http://www.christophheibl.de/ch-home.html
>
> SAVE PAPER - THINK BEFORE YOU PRINT
>
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