[R-SIG-Mac] rimage doesn't install on Mac OS X 10.4

[Simon Urbanek]

Thanks, Scott. That shows that my guess was wrong :).
Please make sure you're using Apple's gcc: run "which g++" and make  
sure it's showing /usr/bin/g++ (in fact it's worth running  
system("which g++") in R to make sure R doesn't add anything). If  
that's not the case, please fix your PATH to /usr/bin before any other  
paths and/or move any rogue compilers aside. If that is not the issue,  
let me know.

Cheers,
S

PS: There is no need to use sudo if you are admin already. Using sudo  
is tricky as it makes it impossible for admins to update packages  
later without running as root which should be avoided  in general. The  
problem is that using sudo just once is enough to lock you in that.


On Nov 12, 2008, at 15:33 , Waichler, Scott R wrote:

>> can you, please, include sessionInfo() in your output?
>> Without knowing what machine you're running on (and
>> incomplete output you sent) I can only guess that you simply
>> don't have universal binary of your dependent libraries so
>> you cannot build a universal package (somewhat likely given
>> that you're pulling in fink directories).
>
> Here is the sessionInfo() output from my ssh session on the Mac:
>
>> sessionInfo()
> R version 2.8.0 (2008-10-20)
> powerpc-apple-darwin8.11.1
>
> locale:
> C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
>
> And here's the complete output from my install attempt:
>
> ice.pnl.gov:/home/waichler<952>sudo R CMD INSTALL
> --configure-vars='LDFLAGS=-L/sw/lib CPPFLAGS=-I/sw/include'
> /Users/ladmin/rimage_0.5-7.tar.gz
> Password:
> * Installing to library
> '/Library/Frameworks/R.framework/Resources/library'
> * Installing *source* package 'rimage' ...
> checking for g++... g++
> checking for C++ compiler default output... a.out
> checking whether the C++ compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C++ compiler... yes
> checking whether g++ accepts -g... yes
> checking for gcc... gcc
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ANSI C... none needed
> checking how to run the C preprocessor... gcc -E
> checking for egrep... grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking fftw.h usability... yes
> checking fftw.h presence... yes
> checking for fftw.h... yes
> checking jpeglib.h usability... yes
> checking jpeglib.h presence... yes
> checking for jpeglib.h... yes
> checking for inline... inline
> checking for stdlib.h... (cached) yes
> checking for GNU libc compatible malloc... yes
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> ** arch - ppc
> g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc -g -O2
> -I/sw/include  -I/usr/local/include    -fPIC  -g -O2 -c equalize.cpp  
> -o
> equalize.o
> gcc -arch ppc -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc -g -O2
> -I/sw/include-I/usr/local/include    -fPIC  -g -O2 -c  
> fftw_access_func.c
> -o fftw_access_func.o
> g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc -g -O2
> -I/sw/include  -I/usr/local/include    -fPIC  -g -O2 -c  
> freqfilters.cpp
> -o freqfilters.o
> g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc -g -O2
> -I/sw/include  -I/usr/local/include    -fPIC  -g -O2 -c  
> interface.cpp -o
> interface.o
> gcc -arch ppc -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc -g -O2
> -I/sw/include-I/usr/local/include    -fPIC  -g -O2 -c jpegio.c -o
> jpegio.o
> jpegio.c: In function 'read_JPEG_file':
> jpegio.c:108: warning: pointer targets in assignment differ in
> signedness
> gcc -arch ppc -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc -g -O2
> -I/sw/include-I/usr/local/include    -fPIC  -g -O2 -c laplacian.c -o
> laplacian.o
> laplacian.c: In function 'laplacian':
> laplacian.c:14: warning: implicit declaration of function 'clearFrame'
> g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc -g -O2
> -I/sw/include  -I/usr/local/include    -fPIC  -g -O2 -c matrix.cpp -o
> matrix.o
> gcc -arch ppc -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc -g -O2
> -I/sw/include-I/usr/local/include    -fPIC  -g -O2 -c smooth.c -o
> smooth.o
> gcc -arch ppc -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/ppc -g -O2
> -I/sw/include-I/usr/local/include    -fPIC  -g -O2 -c sobel.c -o  
> sobel.o
> g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names
> -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module
> -multiply_defined suppress -L/usr/local/lib -o rimage.so equalize.o
> fftw_access_func.o freqfilters.o interface.o jpegio.o laplacian.o
> matrix.o smooth.o sobel.o -L/sw/lib -ljpeg -lfftw
> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> -Wl,CoreFoundation
> ld: /Library/Frameworks/R.framework/../R.framework/R load command 14
> unknown cmd field
> /usr/bin/libtool: internal link edit command failed
> make: *** [rimage.so] Error 1
> chmod:
> /Library/Frameworks/R.framework/Versions/2.8/Resources/library/ 
> rimage/li
> bs/ppc/*: No such file or directory
> ERROR: compilation failed for package 'rimage'
> ** Removing
> '/Library/Frameworks/R.framework/Versions/2.8/Resources/library/ 
> rimage'
> ice.pnl.gov:/home/waichler<953>
>
> Scott
>
>