[R-SIG-Mac] Install fails

Steven McKinney smckinney at bccrc.ca
Wed Mar 26 02:20:51 CET 2008


I'm not sure if your problem is related to mine - 
today I chose to allow the Apple update program
to update Safari and install security updates.
R.app crashes now every time I try to open it.
(Full crash report at end)

See e.g.
http://discussions.apple.com/thread.jspa?threadID=1453379&tstart=0

Did Safari 3.1 get installed on your new drive?

I'd recommend skipping the Safari update to
anyone who gets prompted to install updates
until this issue is resolved.

Today's updates:
2008-03-25 11:59:46 -0700: Installed "Safari" (3.1)
2008-03-25 12:00:05 -0700: Installed "Security Update 2008-002 (PowerPC)" (1.0)

I can still run R in Emacs or at a terminal prompt
but no joy with R.app GUI.


Steven McKinney

Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre

email: smckinney +at+ bccrc +dot+ ca

tel: 604-675-8000 x7561

BCCRC
Molecular Oncology
675 West 10th Ave, Floor 4
Vancouver B.C. 
V5Z 1L3
Canada




-----Original Message-----
From: r-sig-mac-bounces at stat.math.ethz.ch on behalf of Daschbach, John L
Sent: Tue 3/25/2008 6:09 PM
To: R List
Subject: [R-SIG-Mac] Install fails
 

My Powerbook 12 had a fresh drive installed yesterday and is loaded with
10.4.11.  Trying to install R-GUI-4944-2.6-Deployment.dmg reports "Install
Failed".  No explanation is given.

It worked before, and works on my other machines (Leopard and 10.4.10).

Any ideas?

-John

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R-SIG-Mac at stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac


Date/Time:      2008-03-25 18:16:13.513 -0700
OS Version:     10.4.11 (Build 8S165)
Report Version: 4

Command: R
Path:    /Applications/R.app/Contents/MacOS/R
Parent:  WindowServer [65]

Version: R 2.6.2 GUI 1.23 (4932) (4932)

PID:    384
Thread: 0

Exception:  EXC_BAD_ACCESS (0x0001)
Codes:      KERN_INVALID_ADDRESS (0x0001) at 0xc3654130

Thread 0 Crashed:
0   <<00000000>> 	0xc3654130 0 + -1016774352
1   <<00000000>> 	0x0007a26c 0 + 500332
2   <<00000000>> 	0x0007a158 0 + 500056
3   <<00000000>> 	0x0007a038 0 + 499768
4   <<00000000>> 	0x0007a000 0 + 499712
5   com.apple.CoreGraphics 	0x9f907c00 CPSRegisterWithServer + 576
6   com.apple.HIServices   	0x924799d4 RegisterProcess + 76
7   com.apple.HIServices   	0x92479840 INIT_Processes + 188
8   com.apple.HIServices   	0x92479748 GetCurrentProcess + 56
9   com.apple.HIToolbox    	0x9201c054 GetSystemUIMode + 80
10  com.apple.HIToolbox    	0x9201bfbc IsMenuBarVisible + 56
11  com.apple.AppKit       	0x9250a71c _NSInitializeAppContext + 56
12  com.apple.AppKit       	0x9250a0d0 -[NSApplication init] + 648
13  com.apple.AppKit       	0x92509c3c +[NSApplication sharedApplication] + 156
14  org.R-project.R        	0x00002f50 main + 328
15  org.R-project.R        	0x00002d8c _start + 760
16  org.R-project.R        	0x00002a90 start + 48

Thread 0 crashed with PPC Thread State 64:
  srr0: 0x00000000c3654130 srr1: 0x100000000000f030                        vrsave: 0x0000000000000000
    cr: 0x24200204          xer: 0x0000000000000000   lr: 0x000000000007a20c  ctr: 0x0000000000000000
    r0: 0x00000000c3654131   r1: 0x00000000bfffeed0   r2: 0x0000000000000e03   r3: 0x000000000007a1e0
    r4: 0x000000000007af5d   r5: 0x00000000bfffef48   r6: 0x0000000000000034   r7: 0x0000000000000e03
    r8: 0x0000000000000000   r9: 0x0000000000000000  r10: 0x000000000251e790  r11: 0x00000000afdf2a28
   r12: 0x0000000000000000  r13: 0x000000000007af49  r14: 0x0000000000000000  r15: 0x0000000000000000
   r16: 0x0000000000000000  r17: 0x00000000a2529ba0  r18: 0x00000000a2509ba0  r19: 0x00000000a2539ba0
   r20: 0x00000000a2539ba0  r21: 0x00000000af8979c8  r22: 0x00000000af8979c8  r23: 0x0000000000000180
   r24: 0x00000000af89ba70  r25: 0x0000000000000002  r26: 0x00000000bffffdb4  r27: 0x00000000afdedfe8
   r28: 0x0000000000000130  r29: 0x0000000080001513  r30: 0x00000000bffff100  r31: 0x000000009f90b674

Binary Images Description:
    0x1000 -    0x3ffff org.R-project.R R 2.6.2 GUI 1.23 (4932) (4932)	/Applications/R.app/Contents/MacOS/R
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0x91148000 - 0x91169fff com.apple.LangAnalysis 1.6.1	/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x91249000 - 0x91300fff com.apple.QD 3.10.25 (???)	/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
0x9133e000 - 0x913cffff com.apple.print.framework.PrintCore 4.6 (177.13)	/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
0x91435000 - 0x9143dfff libbsm.dylib 	/usr/lib/libbsm.dylib
0x914f9000 - 0x914f9fff com.apple.ApplicationServices 10.4 (???)	/System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
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0x91997000 - 0x919abfff com.apple.speech.synthesis.framework 3.3	/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x91ab8000 - 0x91c73fff com.apple.security 4.6 (29770)	/System/Library/Frameworks/Security.framework/Versions/A/Security
0x91df4000 - 0x91e36fff com.apple.LaunchServices 182	/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0x92019000 - 0x92327fff com.apple.HIToolbox 1.4.10 (???)	/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x92478000 - 0x924d6fff com.apple.HIServices 1.5.3 (???)	/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
0x92507000 - 0x92b3afff com.apple.AppKit 6.4.10 (824.45)	/System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x92fe0000 - 0x92ff0fff com.apple.speech.recognition.framework 3.4	/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
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0x95d10000 - 0x95d82fff com.apple.CoreData 91 (92.1)	/System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x95e85000 - 0x95eaefff com.apple.Metadata 10.4.4 (121.36)	/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
0x9630a000 - 0x963dcfff com.apple.ColorSync 4.4.10	/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x964c1000 - 0x964f9fff com.apple.AE 1.5 (297)	/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
0x9656d000 - 0x9656dfff com.apple.Accelerate 1.2.2 (Accelerate 1.2.2)	/System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
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0x9eca5000 - 0x9ecb3fff libz.1.dylib 	/usr/lib/libz.1.dylib
0x9ece5000 - 0x9ecf0fff libgcc_s.1.dylib 	/usr/lib/libgcc_s.1.dylib
0x9f810000 - 0x9f819fff com.apple.DiskArbitration 2.1.2	/System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
0x9f820000 - 0x9f862fff com.apple.CFNetwork 129.22 (129.23)	/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
0x9f877000 - 0x9f87cfff libmathCommon.A.dylib 	/usr/lib/system/libmathCommon.A.dylib
0x9f87e000 - 0x9fc39fff com.apple.CoreGraphics 1.258.77 (???)	/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
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0x9fdd3000 - 0x9fde5fff libauto.dylib 	/usr/lib/libauto.dylib
0x9fdec000 - 0x9ffa8fff libSystem.B.dylib 	/usr/lib/libSystem.B.dylib

Model: PowerMac11,2, BootROM 5.2.7f1, 4 processors, PowerPC G5 (1.1), 2.5 GHz, 16 GB
Graphics: NVIDIA GeForce 6600, GeForce 6600, PCI, 256 MB
Memory Module: DIMM0/J6700, 2 GB, DDR2 SDRAM, PC2-4200U-444
Memory Module: DIMM1/J6800, 2 GB, DDR2 SDRAM, PC2-4200U-444
Memory Module: DIMM2/J6900, 2 GB, DDR2 SDRAM, PC2-4200U-444
Memory Module: DIMM3/J7000, 2 GB, DDR2 SDRAM, PC2-4200U-444
Memory Module: DIMM4/J7100, 2 GB, DDR2 SDRAM, PC2-4200U-444
Memory Module: DIMM5/J7200, 2 GB, DDR2 SDRAM, PC2-4200U-444
Memory Module: DIMM6/J7300, 2 GB, DDR2 SDRAM, PC2-4200U-444
Memory Module: DIMM7/J7400, 2 GB, DDR2 SDRAM, PC2-4200U-444
Network Service: Built-in Ethernet 1, Ethernet, en0
PCI Card: GeForce 6600, Display, SLOT-1
PCI Card: bcom5714, network, GIGE
PCI Card: bcom5714, network, GIGE
Serial ATA Device: Hitachi HDS725050KLA360, 465.76 GB
Serial ATA Device: Hitachi HDS725050KLA360, 465.76 GB
Parallel ATA Device: HL-DT-ST DVD-RW GWA-4165B
USB Device: Hub, Up to 480 Mb/sec, 500 mA
USB Device: Hub in Apple Pro Keyboard, Mitsumi Electric, Up to 12 Mb/sec, 500 mA
USB Device: Apple Optical USB Mouse, Mitsumi Electric, Up to 1.5 Mb/sec, 100 mA
USB Device: Apple Pro Keyboard, Mitsumi Electric, Up to 12 Mb/sec, 250 mA
USB Device: Apple Cinema Display, Apple Computer, Inc., Up to 12 Mb/sec, 500 mA
FireWire Device: iSight, Apple Computer, Inc., Up to 400 Mb/sec
FireWire Device: unknown_device, unknown_value, Up to 400 Mb/sec
FireWire Device: unknown_device, unknown_value, Up to 400 Mb/sec



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