[R-SIG-Mac] RGUI repeatedly crashes when editing code
Matthieu Dubois
Matthieu.Dubois at psp.ucl.ac.be
Thu Jul 26 16:16:38 CEST 2007
Dear mac useRs,
I have problems when trying to edit code in the RGUI when the file
was open by clicking in the finder.
I repeated the same operation a lot of times and obtain two different
kinds of problems: either the edited file 'freezed' and the R console
display a error message (see below) or the R GUI crashed (log below).
Everything was right when I edited the file after opening by Cmd-O in
the R GUI.
Any help would be helpful
Regards,
Matthieu
R GUI 1.21-pre (devel 4665) (4665)
> sessionInfo()
R version 2.5.1 (2007-06-27)
powerpc-apple-darwin8.9.1
locale:
en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] "stats" "graphics" "grDevices" "utils" "datasets"
[6] "methods" "base"
Operation:
- open a file by clicking on it in the finder
- then edit it (I typed setwd(''), and the problem appeared aften
typing the ''. However, the same problems appeared in other occasions
also ... )
Then:
(1) the edited file became completely empty and blocked (not edition
was possible) while the following message was displayed in the R console
2007-07-26 11:32:03.048 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:03.049 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:03.607 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:03.607 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:04.725 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:04.725 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:05.845 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:05.845 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:06.966 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:06.966 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:08.085 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:08.085 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:09.205 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:09.205 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:10.325 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:10.325 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:11.445 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:11.445 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:12.557 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
2007-07-26 11:32:12.557 R[571] *** -[NSSelectionArray set]: selector
not recognized [self = 0x1632650]
or (2) R crashed :
From R
**********
*** caught bus error ***
address 0x20, cause 'invalid alignment'
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
2007-07-26 11:20:12.539 R[562] Exception raised during background
layout: -[NSLayoutManager
_fillLayoutHoleAtIndex:desiredNumberOfLines:] *** attempted layout
while textStorage is editing. It is not valid to cause the
layoutManager to do layout while the textStorage is editing (ie the
textStorage has been sent a beginEditing message without a matching
endEditing.)
2007-07-26 11:20:12.540 R[562] Exception raised during posting of
notification. Ignored. exception: -[NSLayoutManager
_fillLayoutHoleAtIndex:desiredNumberOfLines:] *** attempted layout
while textStorage is editing. It is not valid to cause the
layoutManager to do layout while the textStorage is editing (ie the
textStorage has been sent a beginEditing message without a matching
endEditing.)
>
Selection:
CONSOLE.LOG
**********
Host Name: imac-g5-de-administrateur
Date/Time: 2007-07-26 11:20:07.748 +0200
OS Version: 10.4.10 (Build 8R218)
Report Version: 4
Command: R
Path: /Applications/R.app/Contents/MacOS/R
Parent: WindowServer [272]
Version: R GUI 1.21-pre (devel 4665) (4665)
PID: 562
Thread: 0
Exception: EXC_BAD_ACCESS (0x0001)
Codes: KERN_PROTECTION_FAILURE (0x0002) at 0x00000020
Thread 0 Crashed:
0 <<00000000>> 0xfffeff18 objc_msgSend_rtp + 24
1 com.apple.AppKit 0x9386953c -[NSCalibratedRGBColor
isEqual:] + 80
2 com.apple.AppKit 0x937f3038 -[NSAttributeDictionary
newWithKey:object:] + 364
3 com.apple.Foundation 0x92be95f8 -
[NSConcreteMutableAttributedString addAttribute:value:range:] + 252
4 com.apple.AppKit 0x93868d54 -[NSConcreteTextStorage
addAttribute:value:range:] + 88
5 org.R-project.R 0x0002d850 -[REditorTextStorage
addAttribute:value:range:] + 60
6 org.R-project.R 0x0002c4fc -[RDocumentWinCtrl
updateSyntaxHighlightingForRange:] + 1988
7 org.R-project.R 0x0002bb8c -[RDocumentWinCtrl
textStorageDidProcessEditing:] + 168
8 com.apple.Foundation 0x92bdfae4 _nsnote_callback + 180
9 com.apple.CoreFoundation 0x90805078 __CFXNotificationPost + 368
10 com.apple.CoreFoundation 0x907fd114
_CFXNotificationPostNotification + 684
11 com.apple.Foundation 0x92bc9eec -[NSNotificationCenter
postNotificationName:object:userInfo:] + 92
12 com.apple.AppKit 0x93875868 -[NSTextStorage
processEditing] + 148
13 com.apple.AppKit 0x93876478 -[NSTextStorage endEditing]
+ 80
14 org.R-project.R 0x0002d724 -[REditorTextStorage
endEditing] + 52
15 com.apple.AppKit 0x938b1d84 -[NSTextView
replaceCharactersInRange:withString:] + 588
16 org.R-project.R 0x0003131c -[RTextView keyDown:] + 992
17 com.apple.AppKit 0x937f9fa0 -[NSWindow sendEvent:] + 6424
18 com.apple.AppKit 0x937a28d4 -[NSApplication sendEvent:]
+ 4172
19 org.R-project.R 0x000057ec -[RController
handleReadConsole:] + 84
20 org.R-project.R 0x0000ca84 Re_ReadConsole + 100
21 org.R-project.R 0x00016b38 run_REngineRmainloop + 296
22 org.R-project.R 0x0000f7f8 -[REngine runREPL] + 436
23 org.R-project.R 0x00002c80 main + 944
24 org.R-project.R 0x00002854 _start + 760
25 org.R-project.R 0x00002558 start + 48
Thread 1:
0 libSystem.B.dylib 0x9001f88c select + 12
1 org.R-project.R 0x0000460c -[RController readThread:] +
648
2 com.apple.Foundation 0x92be01a0 forkThreadForFunction + 108
3 libSystem.B.dylib 0x9002bd08 _pthread_body + 96
Thread 2:
0 libSystem.B.dylib 0x9002c3c8 semaphore_wait_signal_trap + 8
1 libSystem.B.dylib 0x90030eac pthread_cond_wait + 480
2 com.apple.Foundation 0x92be730c -[NSConditionLock
lockWhenCondition:] + 68
3 com.apple.AppKit 0x9383a708 -[NSUIHeartBeat
_heartBeatThread:] + 324
4 com.apple.Foundation 0x92be01a0 forkThreadForFunction + 108
5 libSystem.B.dylib 0x9002bd08 _pthread_body + 96
Thread 0 crashed with PPC Thread State 64:
srr0: 0x00000000fffeff18 srr1:
0x100000000200f030 vrsave: 0x0000000000000000
cr: 0x44004434 xer: 0x0000000000000000 lr:
0x000000009386953c ctr: 0x0000000092bbc3d4
r0: 0x0000000003b50210 r1: 0x00000000bfffe230 r2:
0x000000000180483c r3: 0x0000000001635670
r4: 0x0000000090a9ec68 r5: 0x00000000a37db2f4 r6:
0x0000000093d31e0c r7: 0x0000000000000072
r8: 0x0000000000000072 r9: 0x0000000000000003 r10:
0x00000000a37b56c8 r11: 0x000000006f57ec68
r12: 0x0000000000000000 r13: 0x0000000000040000 r14:
0x0000000000040000 r15: 0x0000000000040000
r16: 0x0000000000040000 r17: 0x0000000000000000 r18:
0x0000000000000258 r19: 0x000000000166a120
r20: 0x0000000001635350 r21: 0x00000000000002af r22:
0x0000000001650190 r23: 0x0000000000000000
r24: 0x0000000001635670 r25: 0x00000000a37b56c8 r26:
0x0000000001661e80 r27: 0x0000000001635670
r28: 0x0000000001661e80 r29: 0x0000000000000000 r30:
0x0000000001635610 r31: 0x00000000938694ec
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Frameworks/CoreData.framework/Versions/A/CoreData
0x94200000 - 0x942c4fff com.apple.audio.toolbox.AudioToolbox 1.4.5 /
System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
0x94316000 - 0x94316fff com.apple.audio.units.AudioUnit 1.4 /System/
Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x94318000 - 0x944d8fff com.apple.QuartzCore 1.4.12 /System/Library/
Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x94522000 - 0x9455ffff libsqlite3.0.dylib /usr/lib/libsqlite3.0.dylib
0x94567000 - 0x945b7fff libGLImage.dylib /System/Library/Frameworks/
OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x945c0000 - 0x945dafff com.apple.CoreVideo 1.4.1 /System/Library/
Frameworks/CoreVideo.framework/Versions/A/CoreVideo
0x945ea000 - 0x9460bfff libmx.A.dylib /usr/lib/libmx.A.dylib
0x947b7000 - 0x947c6fff libCGATS.A.dylib /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
CoreGraphics.framework/Versions/A/Resources/libCGATS.A.dylib
0x947ce000 - 0x947dbfff libCSync.A.dylib /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib
0x94821000 - 0x9483afff libRIP.A.dylib /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
0x94c44000 - 0x94cb5fff libstdc++.6.dylib /usr/lib/libstdc++.6.dylib
0x95c24000 - 0x95cd5fff com.apple.WebKit 522.11 /System/Library/
Frameworks/WebKit.framework/Versions/A/WebKit
0x95d39000 - 0x95debfff com.apple.JavaScriptCore 522.10 /System/
Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x95e12000 - 0x96353fff com.apple.WebCore 522.12 /System/Library/
Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/
Versions/A/WebCore
0x965b3000 - 0x965c0fff com.apple.agl 2.5.6 (AGL-2.5.6) /System/
Library/Frameworks/AGL.framework/Versions/A/AGL
0x965d8000 - 0x96601fff libxslt.1.dylib /usr/lib/libxslt.1.dylib
0x969a8000 - 0x969aafff com.apple.ExceptionHandling 1.2 (???) /System/
Library/Frameworks/ExceptionHandling.framework/Versions/A/
ExceptionHandling
0x96eca000 - 0x96ef8fff libncurses.5.4.dylib /usr/lib/libncurses.
5.4.dylib
0x97950000 - 0x9796ffff com.apple.vecLib 3.2.2 (vecLib 3.2.2) /System/
Library/Frameworks/vecLib.framework/Versions/A/vecLib
Matthieu Dubois
Ph.D. Student
Cognition and Development Lab
Catholic University of Louvain
10, Place Cardinal Mercier
B-1348 Louvain-la-Neuve - Belgium
E-mail: Matthieu.Dubois at psp.ucl.ac.be
Web: http://www.code.ucl.ac.be/MatthieuDubois/
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