[R-SIG-Mac] Compiling 2.5.1 on OSX Panther (James Kyle)

[James R. Milks]

You can find the compiled version of R 2.5.1 for OS 10.4.4 or higher  
at http://cran.r-project.org/bin/macosx/.  I try not to get into  
compiling myself as I've had pretty bad luck with doing compilations.

Hope this helps.

Jim Milks

Graduate Student
Environmental Sciences Ph.D. Program
136 Biological Sciences
Wright State University
3640 Colonel Glenn Hwy
Dayton, OH 45431

On Aug 9, 2007, at 3:04 PM, krunk7 at gmail.com wrote:

>
> Date: Thu, 9 Aug 2007 15:04:24 -0700
> From: James Kyle <krunk7 at gmail.com>
> Subject: [R-SIG-Mac] Compiling 2.5.1 on OSX Panther
> To: r-sig-mac at stat.math.ethz.ch
> Message-ID: <4412A51C-DB1D-41D2-93A5-B04EF7A5993D at gmail.com>
> Content-Type: text/plain; charset=US-ASCII; delsp=yes; format=flowed
>
> Hello all,
>
> I'm attempting to compile R 2.5.1 on OSX Panther and have run into
> some issues. First off, if anyone has a link to a binary build of
> 2.5.1 for Panther I have no issue going that route.
>
> -) gcc version 3.3 20030304 (Apple Computer, Inc. build 1666)
> -) g77 version 3.4.2
> -) ./configure --with-blas='-framework vecLib' --with-lapack
> R_PAPERSIZE=letter F77=g77
>
> When first seeing the build issues, I wanted to verify that I have
> the necessary basic environment. I grabbed the 2.2.1 sources, which
> are the latest version available with a binary for Panther, and they
> compiled without a hitch.
>
> The error appears in the lapack module when building
> libRlapack.dylib. Error output is:
>
>> make[4]: Entering directory `/opt/sandbox/R-2.5.1/src/modules/lapack'
>> gcc -std=gnu99 -dynamiclib -L/sw/lib -L/usr/local/lib -o
>> libRlapack.dylib dlamch.o dlapack0.o dlapack1.o dlapack2.o
>> dlapack3.o dlapack4.o cmplx.o -install_name libRlapack.dylib -
>> compatibility_version 2.5.0 -current_version 2.5.1  -
>> headerpad_max_install_names  -L/usr/local/lib/gcc/powerpc-apple-
>> darwin6.8/3.4.2 -lg2c -L../../../lib -lR
>> /usr/bin/libtool: internal link edit command failedld: warning
>> multiple definitions of symbol _z_abs/usr/local/lib/libg2c.a
>> (z_abs.o) definition of _z_abs in section (__TEXT,__text)../../../
>> lib/libR.dylib(z_abs.o) definition of _z_absld: warning multiple
>> definitions of symbol _f__cabs/usr/local/lib/libg2c.a(cabs.o)
>> definition of _f__cabs in section (__TEXT,__text)../../../lib/
>> libR.dylib(cabs.o) definition of _f__cabsld: common symbols not
>> allowed with MH_DYLIB output format with the -multi_module option/
>> usr/local/lib/libg2c.a(err.o) definition of common _f__cblank (size
>> 4)/usr/local/lib/libg2c.a(fmt.o) definition of common _f__cnt (size
>> 40)/usr/local/lib/libg2c.a(fmt.o) definition of common f(char,  *)
>> (size 4)/usr/local/lib/libg2c.a(err.o) definition of common f(char,
>> long *, short __restrict) (size 4)/usr/local/lib/libg2c.a(err.o)
>> definition of common _f__cursor (size 4)/usr/local/lib/libg2c.a
>> (err.o) definition of common _f__doed (size 4)/usr/local/lib/
>> libg2c.a(err.o) definition of common _f__doend (size 4)/usr/local/
>> lib/libg2c.a(err.o) definition of common _f__doned (size 4)/usr/
>> local/lib/libg2c.a(err.o) definition of common _f__dorevert (size
>> 4)/usr/local/lib/libg2c.a(err.o) definition of common _f__elist
>> (size 4)/usr/local/lib/libg2c.a(err.o) definition of common
>> _f__fmtbuf (size 4)/usr/local/lib/libg2c.a(err.o) definition of
>> common _f__fmtlen (size 4)/usr/local/lib/libg2c.a(err.o) definition
>> of common _f__init (size 4)/usr/local/lib/libg2c.a(fmt.o)
>> definition of common _f__nonl (size 4)/usr/local/lib/libg2c.a
>> (fmt.o) definition of common _f__parenlvl (size 4)/usr/local/lib/
>> libg2c.a(fmt.o) definition of common f(char *) (size 4)/usr/local/
>> lib/libg2c.a(fmt.o) definition of common _f__ret (size 40)/usr/
>> local/lib/libg2c.a(fmt.o) definition of common _f__revloc (size 4)/
>> usr/local/lib/libg2c.a(fmt.o) definition of common f(long double,
>> *) (size 4)/usr/local/lib/libg2c.a(err.o) definition of common
>> _f__scale (size 4)/usr/local/lib/libg2c.a(fmt.o) definition of
>> common _f__workdone (size 4)/usr/local/lib/libg2c.a(err.o)
>> definition of common _f__units (size 4800)/usr/local/lib/libg2c.a
>> (err.o) definition of common f(char, float) (size 4)/usr/local/lib/
>> libg2c.a(err.o) definition of common _f__curunit (size 4)/usr/local/
>> lib/libg2c.a(err.o) definition of common _f__donewrec (size 4)/usr/
>> local/lib/libg2c.a(err.o) definition of common _f__external (size
>> 4)/usr/local/lib/libg2c.a(err.o) definition of common _f__formatted
>> (size 4)/usr/local/lib/libg2c.a(err.o) definition of common
>> _f__hiwater (size 4)/usr/local/lib/libg2c.a(err.o) definition of
>> common _f__putn (size 4)/usr/local/lib/libg2c.a(err.o) definition
>> of common _f__reading (size 4)/usr/local/lib/libg2c.a(err.o)
>> definition of common _f__recpos (size 4)/usr/local/lib/libg2c.a
>> (err.o) definition of common _f__sequential (size 4)/usr/local/lib/
>> libg2c.a(err.o) definition of common _f__getn (size 4)/usr/local/
>> lib/libg2c.a(err.o) definition of common _f__icptr (size 4)/usr/
>> local/lib/libg2c.a(err.o) definition of common f(short, void, int,
>> char) (size 4)
>> make[4]: *** [libRlapack.dylib] Error 1  make[4]: Leaving directory
>> `/opt/sandbox/R-2.5.1/src/modules/lapack'make[3]: *** [R] Error
>> 2make[3]: Leaving directory `/opt/sandbox/R-2.5.1/src/modules/
>> lapack'make[2]: *** [R] Error 1make[2]: Leaving directory `/opt/
>> sandbox/R-2.5.1/src/modules'make[1]: *** [R] Error 1make[1]:
>> Leaving directory `/opt/sandbox/R-2.5.1/src'make: *** [R] Error 1
>
>
>
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