[R-SIG-Mac] New problem loading packages

[Michael Kubovy]

Thanks, that worked.

On Apr 20, 2007, at 10:21 AM, Simon Urbanek wrote:

> Michael,
>
> please make sure you have removed your old 2.4.1 packages from your  
> home before proceeding (best solution is to move ~/Library/R  
> aside). You are still using the package for 2.4.1 instead of the  
> one for 2.5.0.
>
> Cheers,
> Simon
>
>
> On Apr 20, 2007, at 9:24 AM, Michael Kubovy wrote:
>
>> Dear R-Mac users,
>>
>> Following Simon Urbanek's "[R-SIG-Mac] update on failing Mac  
>> packages in 2.4.1" of April 19 I tried to remedy the problem by  
>> installing R 2.5.0.
>>
>> To my chagrin:
>>
>> > install.packages('Hmisc')
>> Warning in install.packages("Hmisc") : argument 'lib' is missing:  
>> using '/Users/mk/Library/R/library'
>> trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/macosx/universal/ 
>> contrib/2.5/Hmisc_3.3-1.tgz'
>> Content type 'application/x-gzip' length 1446599 bytes
>> opened URL
>> ==================================================
>> downloaded 1412Kb
>>
>>
>> The downloaded packages are in
>> 	/tmp/RtmpWaccmS/downloaded_packages
>>
>> > library(Hmisc)
>> Error in dyn.load(x, as.logical(local), as.logical(now)) :
>> 	unable to load shared library '/Users/mk/Library/R/library/Hmisc/ 
>> libs/i386/Hmisc.so':
>>   dlopen(/Users/mk/Library/R/library/Hmisc/libs/i386/Hmisc.so, 6):  
>> Library not loaded: /usr/local/gcc4.0/i686-apple-darwin8/lib/ 
>> libgcc_s.1.0.dylib
>>   Referenced from: /Users/mk/Library/R/library/Hmisc/libs/i386/ 
>> Hmisc.so
>>   Reason: image not found
>> Error: package/namespace load failed for 'Hmisc'
>>
>> > sessionInfo()
>> R version 2.5.0 RC (2007-04-19 r41248)
>> i386-apple-darwin8.9.1
>>
>> locale:
>> en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>
>> attached base packages:
>> [1] "stats"     "graphics"  "grDevices" "utils"     "datasets"   
>> "methods"   "base"
>>
>> other attached packages:
>>   acepack
>> "1.3-2.2"
>>
>> I would be extremely grateful for any help to get me going again.
>>
>> Michael
>>
>> On Apr 20, 2007, at 8:18 AM, Michael Kubovy wrote:
>>
>>> Dear R-Mac users,
>>>
>>> After rebooting my machine today (for reasons unrelated to R):
>>>
>>>>> require(Hmisc)
>>>> Loading required package: Hmisc
>>>> Error in dyn.load(x, as.logical(local), as.logical(now)) :
>>>> 	unable to load shared library '/Users/mk/Library/R/library/Hmisc/
>>>> libs/i386/Hmisc.so':
>>>>   dlopen(/Users/mk/Library/R/library/Hmisc/libs/i386/Hmisc.so, 6):
>>>> Library not loaded: /usr/local/gcc4.0/i686-apple-darwin8/lib/
>>>> libgcc_s.1.0.dylib
>>>>   Referenced from: /Users/mk/Library/R/library/Hmisc/libs/i386/
>>>> Hmisc.so
>>>>   Reason: image not found
>>>> [1] FALSE
>>>
>>> I tried to reinstall Hmisc
>>>
>>>>> install.packages("Hmisc", dep = TRUE)
>>>> Warning in install.packages("Hmisc", dep = TRUE) :
>>>> 	 argument 'lib' is missing: using /Users/mk/Library/R/library
>>>> trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/macosx/universal/
>>>> contrib/2.4/Hmisc_3.3-1.tgz'
>>>> Content type 'application/x-gzip' length 1450661 bytes
>>>> opened URL
>>>> ==================================================
>>>> downloaded 1416Kb
>>>>
>>>>
>>>> The downloaded packages are in
>>>> 	/tmp/RtmpJSBQcq/downloaded_packages
>>>
>>> But the problem remains( and occurs when I try to load the gmodels
>>> package as well. I tried to reinstall R, but the problem remains.
>>>
>>>>> sessionInfo()
>>>> R version 2.4.1 (2006-12-18)
>>>> i386-apple-darwin8.8.1
>>>>
>>>> locale:
>>>> en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>>>
>>>> attached base packages:
>>>> [1] "stats"     "graphics"  "grDevices" "utils"     "datasets"
>>>> "methods"   "base"
>>>>
>>>> other attached packages:
>>>>     acepack        lme4      Matrix     lattice
>>>>   "1.3-2.2" "0.9975-13" "0.9975-11"   "0.14-16"
>>
>>