[R-SIG-Mac] New problem loading packages

[Michael Kubovy]

Dear R-Mac users,

Following Simon Urbanek's "[R-SIG-Mac] update on failing Mac packages  
in 2.4.1" of April 19 I tried to remedy the problem by installing R  
2.5.0.

To my chagrin:

 > install.packages('Hmisc')
Warning in install.packages("Hmisc") : argument 'lib' is missing:  
using '/Users/mk/Library/R/library'
trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/macosx/universal/ 
contrib/2.5/Hmisc_3.3-1.tgz'
Content type 'application/x-gzip' length 1446599 bytes
opened URL
==================================================
downloaded 1412Kb


The downloaded packages are in
	/tmp/RtmpWaccmS/downloaded_packages

 > library(Hmisc)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
	unable to load shared library '/Users/mk/Library/R/library/Hmisc/ 
libs/i386/Hmisc.so':
   dlopen(/Users/mk/Library/R/library/Hmisc/libs/i386/Hmisc.so, 6):  
Library not loaded: /usr/local/gcc4.0/i686-apple-darwin8/lib/libgcc_s. 
1.0.dylib
   Referenced from: /Users/mk/Library/R/library/Hmisc/libs/i386/Hmisc.so
   Reason: image not found
Error: package/namespace load failed for 'Hmisc'

 > sessionInfo()
R version 2.5.0 RC (2007-04-19 r41248)
i386-apple-darwin8.9.1

locale:
en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] "stats"     "graphics"  "grDevices" "utils"     "datasets"   
"methods"   "base"

other attached packages:
   acepack
"1.3-2.2"

I would be extremely grateful for any help to get me going again.

Michael

On Apr 20, 2007, at 8:18 AM, Michael Kubovy wrote:

> Dear R-Mac users,
>
> After rebooting my machine today (for reasons unrelated to R):
>
>>> require(Hmisc)
>> Loading required package: Hmisc
>> Error in dyn.load(x, as.logical(local), as.logical(now)) :
>> 	unable to load shared library '/Users/mk/Library/R/library/Hmisc/
>> libs/i386/Hmisc.so':
>>   dlopen(/Users/mk/Library/R/library/Hmisc/libs/i386/Hmisc.so, 6):
>> Library not loaded: /usr/local/gcc4.0/i686-apple-darwin8/lib/
>> libgcc_s.1.0.dylib
>>   Referenced from: /Users/mk/Library/R/library/Hmisc/libs/i386/
>> Hmisc.so
>>   Reason: image not found
>> [1] FALSE
>
> I tried to reinstall Hmisc
>
>>> install.packages("Hmisc", dep = TRUE)
>> Warning in install.packages("Hmisc", dep = TRUE) :
>> 	 argument 'lib' is missing: using /Users/mk/Library/R/library
>> trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/macosx/universal/
>> contrib/2.4/Hmisc_3.3-1.tgz'
>> Content type 'application/x-gzip' length 1450661 bytes
>> opened URL
>> ==================================================
>> downloaded 1416Kb
>>
>>
>> The downloaded packages are in
>> 	/tmp/RtmpJSBQcq/downloaded_packages
>
> But the problem remains( and occurs when I try to load the gmodels
> package as well. I tried to reinstall R, but the problem remains.
>
>>> sessionInfo()
>> R version 2.4.1 (2006-12-18)
>> i386-apple-darwin8.8.1
>>
>> locale:
>> en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>
>> attached base packages:
>> [1] "stats"     "graphics"  "grDevices" "utils"     "datasets"
>> "methods"   "base"
>>
>> other attached packages:
>>     acepack        lme4      Matrix     lattice
>>   "1.3-2.2" "0.9975-13" "0.9975-11"   "0.14-16"