[R-SIG-Mac] How to revert to older R version?

Kasper Daniel Hansen khansen at stat.Berkeley.EDU
Fri May 12 22:51:29 CEST 2006


And just to clarify, the error in affxparser is special to that  
package, and has nothing to do with the rest of the Bioconductor  
packages.

/Kasper

On May 12, 2006, at 1:43 PM, Kasper Daniel Hansen wrote:

> Having said that, affxparser does not work on Mac OS using the
> version of gcc shipped with R-2.3.0. We are working on it.
>
> /Kasper
>
> On May 12, 2006, at 8:39 AM, Simon Urbanek wrote:
>
>>
>> On May 12, 2006, at 8:36 AM, Booman, M wrote:
>>
>>> Hi Sean,
>>>
>>> Thanks for your reply. I managed to install most of them as source
>>> packages, but for a number of them (and of course the ones I need
>>> most) I got an error message saying that compilation failed. I have
>>> included an example at the bottom of this message.
>>>
>>> Marije
>>>
>>>
>>> trying URL 'http://www.bioconductor.org/packages/bioc/stable/src/
>>> contrib/affxparser_1.2.0.tar.gz'
>>> Content type 'application/x-gzip' length 234898 bytes
>>> opened URL
>>> ==================================================
>>> downloaded 229Kb
>>>
>>>
>>> The downloaded packages are in
>>> 	/private/tmp/RtmpTbWvX1/downloaded_packages
>>> * Installing *source* package 'affxparser' ...
>>> ** libs
>>> ** arch - ppc
>>> ** Removing '/Library/Frameworks/R.framework/Versions/2.3/Resources/
>>> library/affxparser'
>>> /Library/Frameworks/R.framework/Resources/bin/SHLIB: line 1: make:
>>> command not found
>>
>> ^^ - you don't have Apple Xcode tools installed. Those are required
>> to compile packages from sources.
>>
>> Cheers,
>> Simon
>>
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>
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