[R-SIG-Mac] R crash log
Ken Beath
kjbeath at kagi.com
Mon Feb 13 23:44:39 CET 2006
Hi,
This is a crash that occurred while R was within a long optimisation
using nlm, it had been going for about 2 days. The function to be
optimised doesn't do anything unusual except for some print
statements and I would be surprised if it was reproducible, as it has
successfully completed several runs.
Ken
Date/Time: 2006-02-13 18:32:32.960 +1100
OS Version: 10.4.4 (Build 8G32)
Report Version: 3
Command: R
Path: /Applications/R.app/Contents/MacOS/R
Parent: WindowServer [62]
Version: 1.13 (2125)
PID: 471
Thread: 0
Exception: EXC_BAD_ACCESS (0x0001)
Codes: KERN_INVALID_ADDRESS (0x0001) at 0x813255a8
Thread 0 Crashed:
0 <<00000000>> 0xfffeff30 objc_msgSend_rtp + 48
1 com.apple.CoreFoundation 0x9073f5c0 _CFArrayReplaceValues
+ 372
2 com.apple.CoreFoundation 0x9073f438 CFArrayAppendValue + 200
3 com.apple.AppKit 0x93b36ac8 -[NSNavOutlineDelegate
_highlightedNodes] + 160
4 com.apple.AppKit 0x93b35b00 -[NSNavOutlineDelegate
prepareForReloadChildrenForNode:] + 64
5 com.apple.AppKit 0x938c7638 -[NSNavDataSource
_handleChildChanged:] + 332
6 com.apple.Foundation 0x928e6018 _nsnote_callback + 180
7 com.apple.CoreFoundation 0x907844c4 __CFXNotificationPost
+ 368
8 com.apple.CoreFoundation 0x9077c5a0
_CFXNotificationPostNotification + 684
9 com.apple.AppKit 0x93837e90 +[NSNavFBENode
_postNotificationForEvent:notificationName:parent:child:fbeProperty:]
+ 572
10 com.apple.AppKit 0x93837994 +[NSNavFBENode
_reallyProcessNotifications:] + 552
11 com.apple.Foundation 0x92968ea8 __NSFirePerformTimer +
308
12 com.apple.CoreFoundation 0x9075ccd8 __CFRunLoopDoObservers
+ 352
13 com.apple.CoreFoundation 0x9075cf78 __CFRunLoopRun + 420
14 com.apple.CoreFoundation 0x9075ca18 CFRunLoopRunSpecific +
268
15 com.apple.HIToolbox 0x9318e1e0
RunCurrentEventLoopInMode + 264
16 com.apple.HIToolbox 0x9318d7ec ReceiveNextEventCommon
+ 244
17 com.apple.HIToolbox 0x9318d6e0
BlockUntilNextEventMatchingListInMode + 96
18 com.apple.AppKit 0x9368c104 _DPSNextEvent + 384
19 com.apple.AppKit 0x9368bdc8 -[NSApplication
nextEventMatchingMask:untilDate:inMode:dequeue:] + 116
20 org.R-project.R 0x0000bb14 -[RController
doProcessEvents:] + 284 (crt.c:300)
21 org.R-project.R 0x0000bb9c -[RController
handleProcessEvents] + 56 (crt.c:300)
22 org.R-project.R 0x0000fd3c Re_ProcessEvents + 248
(crt.c:300)
23 libR.dylib 0x0026572c Rf_eval + 140 (eval.c:
294)
24 libR.dylib 0x00267f84 Rf_evalList + 300
(eval.c:1383)
25 libR.dylib 0x00265c1c Rf_eval + 1404 (eval.c:
403)
26 libR.dylib 0x00267f84 Rf_evalList + 300
(eval.c:1383)
27 libR.dylib 0x00265c1c Rf_eval + 1404 (eval.c:
403)
28 libR.dylib 0x00266a78 do_if + 48 (eval.c:856)
29 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
30 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
31 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
32 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
33 libR.dylib 0x0029b198 applyMethod + 472
(objects.c:121)
34 libR.dylib 0x0029ba48 Rf_usemethod + 1472
(objects.c:328)
35 libR.dylib 0x0029bc90 do_usemethod + 508
(objects.c:391)
36 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
37 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
38 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
39 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
40 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
41 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
42 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
43 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
44 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
45 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
46 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
47 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
48 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
49 libR.dylib 0x00268b54 Rf_DispatchOrEval +
288 (eval.c:1705)
50 libR.dylib 0x0021c298 do_c + 92 (bind.c:599)
51 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
52 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
53 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
54 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
55 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
56 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
57 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
58 libR.dylib 0x00267f84 Rf_evalList + 300
(eval.c:1383)
59 libR.dylib 0x00265c1c Rf_eval + 1404 (eval.c:
403)
60 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
61 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
62 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
63 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
64 libR.dylib 0x00268b54 Rf_DispatchOrEval +
288 (eval.c:1705)
65 libR.dylib 0x00302798 do_subset3 + 232
(subset.c:921)
66 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
67 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
68 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
69 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
70 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
71 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
72 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
73 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
74 libR.dylib 0x002659b4 Rf_eval + 788 (eval.c:
362)
75 libR.dylib 0x0029af9c GetObject + 600
(objects.c:90)
76 libR.dylib 0x0029bc18 do_usemethod + 388
(objects.c:383)
77 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
78 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
79 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
80 libR.dylib 0x00267f84 Rf_evalList + 300
(eval.c:1383)
81 libR.dylib 0x00265c1c Rf_eval + 1404 (eval.c:
403)
82 libR.dylib 0x002659b4 Rf_eval + 788 (eval.c:
362)
83 libR.dylib 0x0029af9c GetObject + 600
(objects.c:90)
84 libR.dylib 0x0029bc18 do_usemethod + 388
(objects.c:383)
85 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
86 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
87 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
88 libR.dylib 0x00267f84 Rf_evalList + 300
(eval.c:1383)
89 libR.dylib 0x00265c1c Rf_eval + 1404 (eval.c:
403)
90 libR.dylib 0x002659b4 Rf_eval + 788 (eval.c:
362)
91 libR.dylib 0x0029af9c GetObject + 600
(objects.c:90)
92 libR.dylib 0x0029bc18 do_usemethod + 388
(objects.c:383)
93 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
94 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
95 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
96 libR.dylib 0x00267f84 Rf_evalList + 300
(eval.c:1383)
97 libR.dylib 0x00265c1c Rf_eval + 1404 (eval.c:
403)
98 libR.dylib 0x002659b4 Rf_eval + 788 (eval.c:
362)
99 libR.dylib 0x0026590c Rf_eval + 620 (eval.c:
349)
100 libR.dylib 0x00268b54 Rf_DispatchOrEval +
288 (eval.c:1705)
101 libR.dylib 0x0022a0a0 do_asvector + 68
(coerce.c:1249)
102 libR.dylib 0x0029ace4 do_internal + 392
(names.c:1084)
103 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
104 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
105 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
106 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
107 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
108 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
109 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
110 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
111 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
112 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
113 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
114 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
115 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
116 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
117 libR.dylib 0x002a236c fcn + 184 (optimize.c:
349)
118 libR.dylib 0x0032b1c0 fstofd + 180 (uncmin.c:
1624)
119 libR.dylib 0x0032c6d8 optdrv + 2048
(uncmin.c:2397)
120 libR.dylib 0x0032cd30 optif9 + 216 (uncmin.c:
2606)
121 libR.dylib 0x002a2f30 do_nlm + 1164
(optimize.c:685)
122 libR.dylib 0x0029ace4 do_internal + 392
(names.c:1084)
123 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
124 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
125 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
126 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
127 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
128 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
129 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
130 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
131 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
132 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
133 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
134 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
135 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
136 libR.dylib 0x0020bbd8 do_lapply + 364
(apply.c:60)
137 libR.dylib 0x0029ace4 do_internal + 392
(names.c:1084)
138 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
139 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
140 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
141 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
142 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
143 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
144 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
145 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
146 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
147 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
148 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
149 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
150 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
151 libR.dylib 0x00268670 do_eval + 700 (eval.c:
1568)
152 libR.dylib 0x0029ace4 do_internal + 392
(names.c:1084)
153 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
154 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
155 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
156 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
157 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
158 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
159 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
160 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
161 libR.dylib 0x0029b198 applyMethod + 472
(objects.c:121)
162 libR.dylib 0x0029b8b0 Rf_usemethod + 1064
(objects.c:302)
163 libR.dylib 0x0029bc90 do_usemethod + 508
(objects.c:391)
164 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
165 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
166 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
167 libR.dylib 0x002659b4 Rf_eval + 788 (eval.c:
362)
168 libR.dylib 0x0026590c Rf_eval + 620 (eval.c:
349)
169 libR.dylib 0x00268b54 Rf_DispatchOrEval +
288 (eval.c:1705)
170 libR.dylib 0x0022a0a0 do_asvector + 68
(coerce.c:1249)
171 libR.dylib 0x0029ace4 do_internal + 392
(names.c:1084)
172 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
173 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
174 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
175 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
176 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
177 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
178 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
179 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
180 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
181 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
182 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
183 libR.dylib 0x002a236c fcn + 184 (optimize.c:
349)
184 libR.dylib 0x0032b1c0 fstofd + 180 (uncmin.c:
1624)
185 libR.dylib 0x0032c6d8 optdrv + 2048
(uncmin.c:2397)
186 libR.dylib 0x0032cd30 optif9 + 216 (uncmin.c:
2606)
187 libR.dylib 0x002a2f30 do_nlm + 1164
(optimize.c:685)
188 libR.dylib 0x0029ace4 do_internal + 392
(names.c:1084)
189 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
190 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
191 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
192 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
193 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
194 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
195 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
196 libR.dylib 0x00268768 do_eval + 948 (eval.c:
1586)
197 libR.dylib 0x0029ace4 do_internal + 392
(names.c:1084)
198 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
199 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
200 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
201 libR.dylib 0x00267cc4 do_set + 224 (eval.c:
1309)
202 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
203 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
204 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
205 libR.dylib 0x00266f54 do_for + 1120 (eval.c:
953)
206 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
207 libR.dylib 0x00267444 do_begin + 136 (eval.c:
1058)
208 libR.dylib 0x00265aec Rf_eval + 1100 (eval.c:
382)
209 libR.dylib 0x00266148 Rf_applyClosure + 952
(eval.c:576)
210 libR.dylib 0x00265d24 Rf_eval + 1668 (eval.c:
417)
211 org.R-project.R 0x0001f484 RGUI_ReplIteration +
744 (crt.c:300)
212 org.R-project.R 0x0001f174 RGUI_ReplConsole + 196
(crt.c:300)
213 org.R-project.R 0x0001f090 run_REngineRmainloop +
176 (crt.c:300)
214 org.R-project.R 0x00013f30 -[REngine runREPL] +
104 (crt.c:300)
215 org.R-project.R 0x00004654 -[RController
kickstart:] + 116 (crt.c:300)
216 com.apple.Foundation 0x928e949c __NSFireTimer + 116
217 com.apple.CoreFoundation 0x90770aec __CFRunLoopDoTimer + 184
218 com.apple.CoreFoundation 0x9075d464 __CFRunLoopRun + 1680
219 com.apple.CoreFoundation 0x9075ca18 CFRunLoopRunSpecific +
268
220 com.apple.HIToolbox 0x9318e1e0
RunCurrentEventLoopInMode + 264
221 com.apple.HIToolbox 0x9318d874 ReceiveNextEventCommon
+ 380
222 com.apple.HIToolbox 0x9318d6e0
BlockUntilNextEventMatchingListInMode + 96
223 com.apple.AppKit 0x9368c104 _DPSNextEvent + 384
224 com.apple.AppKit 0x9368bdc8 -[NSApplication
nextEventMatchingMask:untilDate:inMode:dequeue:] + 116
225 com.apple.AppKit 0x9368830c -[NSApplication run] +
472
226 com.apple.AppKit 0x93778e68 NSApplicationMain + 452
227 org.R-project.R 0x00002aa4 main + 156 (crt.c:300)
228 org.R-project.R 0x00002738 _start + 392 (crt.c:267)
229 dyld 0x8fe01048 _dyld_start + 60
Thread 1:
0 libSystem.B.dylib 0x9001f20c select + 12
1 org.R-project.R 0x00004ab4 -[RController
readThread:] + 796 (crt.c:300)
2 com.apple.Foundation 0x928e66d4 forkThreadForFunction
+ 108
3 libSystem.B.dylib 0x9002b200 _pthread_body + 96
Thread 2:
0 libSystem.B.dylib 0x90049748 syscall_thread_switch + 8
1 com.apple.Foundation 0x928fead0 +[NSThread
sleepUntilDate:] + 152
2 com.apple.AppKit 0x93729034 -[NSUIHeartBeat
_heartBeatThread:] + 1100
3 com.apple.Foundation 0x928e66d4 forkThreadForFunction
+ 108
4 libSystem.B.dylib 0x9002b200 _pthread_body + 96
Thread 3:
0 libSystem.B.dylib 0x9002e44c kevent + 12
1 com.apple.DesktopServices 0x927f65d4
TFSNotificationTask::FSNotificationTaskProc(void*) + 56
2 ...ple.CoreServices.CarbonCore 0x90b42260 PrivateMPEntryPoint + 76
3 libSystem.B.dylib 0x9002b200 _pthread_body + 96
Thread 4:
0 libSystem.B.dylib 0x9002b8a8
semaphore_wait_signal_trap + 8
1 libSystem.B.dylib 0x9003001c pthread_cond_wait + 488
2 ...ple.CoreServices.CarbonCore 0x90b42450 MPWaitOnQueue + 224
3 com.apple.DesktopServices 0x927f6e20
TNodeSyncTask::SyncTaskProc(void*) + 112
4 ...ple.CoreServices.CarbonCore 0x90b42260 PrivateMPEntryPoint + 76
5 libSystem.B.dylib 0x9002b200 _pthread_body + 96
Thread 0 crashed with PPC Thread State 64:
srr0: 0x00000000fffeff30 srr1:
0x100000000200f930 vrsave: 0x0000000000000000
cr: 0x44022428 xer: 0x0000000000000000 lr:
0x000000009073f5c0 ctr: 0xfffffffffffeff00
r0: 0x0000000001102b98 r1: 0x00000000bffdc1a0 r2:
0x0000000001102b90 r3: 0x000000000abd6f20
r4: 0x0000000090a2aab4 r5: 0x0000000000000000 r6:
0x00000000bffdc6dc r7: 0x0000000000000001
r8: 0x0000000000000006 r9: 0x0000000080222a10 r10:
0x00000000909bd648 r11: 0x000000008a3a7b50
r12: 0x000000000b344960 r13: 0x0000000000000000 r14:
0x0000000000000001 r15: 0x0000000000000000
r16: 0x0000000000000001 r17: 0x000000000b569bf0 r18:
0x000000000b521ec0 r19: 0x000000000b53f200
r20: 0x00000000a36a7ffc r21: 0x00000000bffdc6dc r22:
0x0000000000000000 r23: 0x0000000000000001
r24: 0x00000000a073a150 r25: 0x00000000bffdc1e0 r26:
0x000000000b53dd40 r27: 0x0000000000000001
r28: 0x00000000bffdc1e0 r29: 0x00000000a073c180 r30:
0x0000000000000001 r31: 0x000000009073f464
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