[R-SIG-Mac] Rgraphviz installation problem

Simon Urbanek simon.urbanek at r-project.org
Mon Aug 21 17:03:40 CEST 2006


FWIW: if you want to know which dylibs get loaded, start R like this:

DYLD_PRINT_LIBRARIES=1 R

Seth, which architecture are you using (ppc/i386)?

Cheers,
S

On Aug 21, 2006, at 10:45 AM, Seth Falcon wrote:

> Rob J Goedman <goedman at mac.com> writes:
>
>> I  see the exact same behavior. In this example, plot(g1, "dot")
>> works fine, but as soon as "neato"
>> or "twopi" is selected:
>>
>> Host Name:      Robs-Laptop
>> Date/Time:      2006-08-18 21:29:07.564 -0700
>> OS Version:     10.4.7 (Build 8J135)
>> Report Version: 4
>>
>> Command: R
>> Path:    /Users/rob/Projects/Mac-GUI/build/Development/R.app/ 
>> Contents/
>> MacOS/R
>> Parent:  WindowServer [99]
>>
>> Version: 1.17-pre (3415)
>>
>> PID:    18865
>> Thread: 0
>>
>> Exception:  EXC_BAD_ACCESS (0x0001)
>> Codes:      KERN_PROTECTION_FAILURE (0x0002) at 0x00000000
>>
>> Thread 0 Crashed:
>> 0   libpack.2.dylib                	0x04fb50d4 packGraphs + 240
>> (pack.c:778)
>> 1   libpack.2.dylib                	0x04fb5324 packSubgraphs + 32
>> (pack.c:827)
>> 2   ...plugin_neato_layout.2.dylib 	0x06b5ad34 twopi_layout + 408
>> (twopiinit.c:118)
>> 3   libgvc.2.dylib                 	0x06807510 gvLayoutJobs + 100
>> (gvlayout.c:69)
>> 4   libgvc.2.dylib                 	0x0680a604 gvLayout + 64  
>> (gvc.c:71)
>> 5   Rgraphviz.so                   	0x04f3b754 Rgraphviz_doLayout
>> +  508 (Rgraphviz.c:429)
>> ...
>>
>> Happens both with the the binaries from Simon's web site + the
>> Rgraphiz binary and if I build
>> them from sources.
>
> I can't reproduce it on my system where I've built everything from
> source.  I'm not convinced the tests you've done are what you think
> they are.  R can be very tricky in how it forces certain libs to get
> picked up.
>
> Can anyone else reproduce and provide details on versions of graphviz,
> Rgraphviz, R...
>
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