[R-SIG-Mac] r.app memory segfault crash
Graham Watt-Gremm
sunyata at uvic.ca
Thu Aug 10 23:06:06 CEST 2006
Hi there,
Noting an issue with R.app crashing after a save.image() command; has
been happening now and then lately so I thought I would report it. I
am working extensively from an edit window, returned to the main
console, typed save.image() and it gave me the following warning:
*** caught segfault ***
address 0x8050c6b8, cause 'memory not mapped'
Traceback:
1: lazyLoadDBfetch(key, datafile, compressed, envhook)
2: save.image()
it gave me the possible actions for aborting, I pressed 4 for saving
workspace, and then it gave me the spinning beach ball of death.
Below is the console output
thanks!
Host Name: geefive
Date/Time: 2006-08-10 13:53:34.193 -0700
OS Version: 10.4.7 (Build 8J135)
Report Version: 4
Command: R
Path: /Applications/R.app/Contents/MacOS/R
Parent: WindowServer [71]
Version: 1.16 (3198)
PID: 12957
Thread: 0
Exception: EXC_BAD_ACCESS (0x0001)
Codes: KERN_INVALID_ADDRESS (0x0001) at 0x8050c6b8
Thread 0 Crashed:
0 <<00000000>> 0xfffeff30 objc_msgSend_rtp + 48
1 com.apple.CoreFoundation 0x907bdfa0 _CFArrayReplaceValues
+ 372
2 com.apple.CoreFoundation 0x907bde18 CFArrayAppendValue + 200
3 com.apple.AppKit 0x93bbdc34 -[NSNavOutlineDelegate
_highlightedNodes] + 160
4 com.apple.AppKit 0x93bbcc6c -[NSNavOutlineDelegate
prepareForReloadChildrenForNode:] + 64
5 com.apple.AppKit 0x9394f20c -[NSNavDataSource
_handleChildChanged:] + 332
6 com.apple.Foundation 0x92943ad8 _nsnote_callback + 180
7 com.apple.CoreFoundation 0x90803010 __CFXNotificationPost
+ 368
8 com.apple.CoreFoundation 0x907fb0ec
_CFXNotificationPostNotification + 684
9 com.apple.AppKit 0x938bf938 +[NSNavFBENode
_postNotificationForEvent:notificationName:parent:child:fbeProperty:]
+ 572
10 com.apple.AppKit 0x938bf43c +[NSNavFBENode
_reallyProcessNotifications:] + 552
11 com.apple.Foundation 0x929c6a6c __NSFirePerformTimer +
308
12 com.apple.CoreFoundation 0x907db73c __CFRunLoopDoObservers
+ 352
13 com.apple.CoreFoundation 0x907db9dc __CFRunLoopRun + 420
14 com.apple.CoreFoundation 0x907db47c CFRunLoopRunSpecific +
268
15 com.apple.HIToolbox 0x931eb740
RunCurrentEventLoopInMode + 264
16 com.apple.HIToolbox 0x931eadd4 ReceiveNextEventCommon
+ 380
17 com.apple.HIToolbox 0x931eac40
BlockUntilNextEventMatchingListInMode + 96
18 com.apple.AppKit 0x93713ae4 _DPSNextEvent + 384
19 com.apple.AppKit 0x937137a8 -[NSApplication
nextEventMatchingMask:untilDate:inMode:dequeue:] + 116
20 org.R-project.R 0x0000dc80 -[RController
doProcessEvents:] + 244 (RController.m:1817)
21 org.R-project.R 0x0002bff0 Re_ProcessEvents + 176
(Rcallbacks.m:123)
22 libR.dylib 0x011afb54 R_ProcessEvents + 120
(aqua.c:165)
23 libR.dylib 0x0109d348 Rf_eval + 344 (eval.c:
297)
24 libR.dylib 0x0109d884 Rf_eval + 1684 (eval.c:
359)
25 libR.dylib 0x0109e9d4 Rf_evalList + 132
(eval.c:1400)
26 libR.dylib 0x0109d73c Rf_eval + 1356 (eval.c:
408)
27 libR.dylib 0x010a0c80 Rf_applyClosure + 684
(eval.c:588)
28 libR.dylib 0x0109d550 Rf_eval + 864 (eval.c:
429)
29 libR.dylib 0x0109d588 Rf_eval + 920 (eval.c:
372)
30 libR.dylib 0x0108b244 Rf_findFun + 332
(envir.c:1245)
31 libR.dylib 0x0109d5e0 Rf_eval + 1008 (eval.c:
381)
32 libR.dylib 0x0109e9d4 Rf_evalList + 132
(eval.c:1400)
33 libR.dylib 0x0109d73c Rf_eval + 1356 (eval.c:
408)
34 libR.dylib 0x010a0378 do_if + 48 (eval.c:868)
35 libR.dylib 0x0109d6e4 Rf_eval + 1268 (eval.c:
398)
36 libR.dylib 0x0109d6e4 Rf_eval + 1268 (eval.c:
398)
37 libR.dylib 0x0109f888 do_begin + 84 (eval.c:
1075)
38 libR.dylib 0x0109d6e4 Rf_eval + 1268 (eval.c:
398)
39 libR.dylib 0x010a0c80 Rf_applyClosure + 684
(eval.c:588)
40 libR.dylib 0x0109d550 Rf_eval + 864 (eval.c:
429)
41 org.R-project.R 0x00032390 run_REngineRmainloop +
640 (Rinit.c:391)
42 org.R-project.R 0x0002aa1c -[REngine runREPL] +
68 (REngine.m:167)
43 org.R-project.R 0x0001d340 main + 680 (main.m:101)
44 org.R-project.R 0x00002e8c _start + 340 (crt.c:272)
45 org.R-project.R 0x00002d34 start + 60
Thread 1:
0 libSystem.B.dylib 0x9001f7ac select + 12
1 org.R-project.R 0x0000a588 -[RController
readThread:] + 588 (RController.m:553)
2 com.apple.Foundation 0x92944194 forkThreadForFunction
+ 108
3 libSystem.B.dylib 0x9002bc28 _pthread_body + 96
Thread 2:
0 libSystem.B.dylib 0x9004a568 syscall_thread_switch + 8
1 com.apple.Foundation 0x9295c5d0 +[NSThread
sleepUntilDate:] + 152
2 com.apple.AppKit 0x937b0a10 -[NSUIHeartBeat
_heartBeatThread:] + 1100
3 com.apple.Foundation 0x92944194 forkThreadForFunction
+ 108
4 libSystem.B.dylib 0x9002bc28 _pthread_body + 96
Thread 3:
0 libSystem.B.dylib 0x9000b268 mach_msg_trap + 8
1 libSystem.B.dylib 0x9000b1bc mach_msg + 60
2 com.apple.CoreFoundation 0x907dbb78 __CFRunLoopRun + 832
3 com.apple.CoreFoundation 0x907db47c CFRunLoopRunSpecific +
268
4 com.apple.Foundation 0x9296b69c +[NSURLConnection
(NSURLConnectionInternal) _resourceLoadLoop:] + 264
5 com.apple.Foundation 0x92944194 forkThreadForFunction
+ 108
6 libSystem.B.dylib 0x9002bc28 _pthread_body + 96
Thread 4:
0 libSystem.B.dylib 0x9000b268 mach_msg_trap + 8
1 libSystem.B.dylib 0x9000b1bc mach_msg + 60
2 com.apple.CoreFoundation 0x907dbb78 __CFRunLoopRun + 832
3 com.apple.CoreFoundation 0x907db47c CFRunLoopRunSpecific +
268
4 com.apple.Foundation 0x9296c7dc +[NSURLCache
_diskCacheSyncLoop:] + 152
5 com.apple.Foundation 0x92944194 forkThreadForFunction
+ 108
6 libSystem.B.dylib 0x9002bc28 _pthread_body + 96
Thread 5:
0 libSystem.B.dylib 0x9000b268 mach_msg_trap + 8
1 libSystem.B.dylib 0x9000b1bc mach_msg + 60
2 com.apple.CoreFoundation 0x907dbb78 __CFRunLoopRun + 832
3 com.apple.CoreFoundation 0x907db47c CFRunLoopRunSpecific +
268
4 com.apple.Foundation 0x92953164 -[NSRunLoop
runMode:beforeDate:] + 172
5 com.apple.Foundation 0x9295309c -[NSRunLoop run] + 76
6 com.apple.WebKit 0x95a68f70 +[WebFileDatabase
_syncLoop:] + 176
7 com.apple.Foundation 0x92944194 forkThreadForFunction
+ 108
8 libSystem.B.dylib 0x9002bc28 _pthread_body + 96
Thread 6:
0 libSystem.B.dylib 0x9002efac kevent + 12
1 com.apple.DesktopServices 0x92858250
TFSNotificationTask::FSNotificationTaskProc(void*) + 56
2 ...ple.CoreServices.CarbonCore 0x90bc1900 PrivateMPEntryPoint + 76
3 libSystem.B.dylib 0x9002bc28 _pthread_body + 96
Thread 7:
0 libSystem.B.dylib 0x9002c2e8
semaphore_wait_signal_trap + 8
1 libSystem.B.dylib 0x90030dcc pthread_cond_wait + 480
2 ...ple.CoreServices.CarbonCore 0x90bc1af0 MPWaitOnQueue + 224
3 com.apple.DesktopServices 0x928588cc
TNodeSyncTask::SyncTaskProc(void*) + 116
4 ...ple.CoreServices.CarbonCore 0x90bc1900 PrivateMPEntryPoint + 76
5 libSystem.B.dylib 0x9002bc28 _pthread_body + 96
Thread 0 crashed with PPC Thread State 64:
srr0: 0x00000000fffeff30 srr1:
0x100000000200f030 vrsave: 0x0000000000000000
cr: 0x44002428 xer: 0x0000000000000000 lr:
0x00000000907bdfa0 ctr: 0xfffffffffffeff00
r0: 0x0000000000502c98 r1: 0x00000000bfffaac0 r2:
0x0000000000502c90 r3: 0x0000000015755620
r4: 0x0000000090aa9aa0 r5: 0x0000000000000000 r6:
0x00000000bfffaffc r7: 0x0000000000000001
r8: 0x0000000000000008 r9: 0x0000000080009a20 r10:
0x0000000090a3c628 r11: 0x000000008a51bb60
r12: 0x000000001b9b9480 r13: 0x0000000000000000 r14:
0x0000000000000001 r15: 0x0000000000000000
r16: 0x0000000000000000 r17: 0x000000001b9b41a0 r18:
0x000000001b9b5180 r19: 0x000000001b9b2f70
r20: 0x00000000a372eef4 r21: 0x00000000bfffaffc r22:
0x0000000000000000 r23: 0x0000000000000001
r24: 0x00000000a07b9150 r25: 0x00000000bfffab00 r26:
0x000000001b9b9d60 r27: 0x0000000000000001
r28: 0x00000000bfffab00 r29: 0x00000000a07bb17c r30:
0x0000000000000001 r31: 0x00000000907bde44
Binary Images Description:
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0x940cb000 - 0x9413bfff com.apple.CoreData 80 /System/Library/
Frameworks/CoreData.framework/Versions/A/CoreData
0x94174000 - 0x94237fff com.apple.audio.toolbox.AudioToolbox 1.4.3 /
System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
0x94289000 - 0x94289fff com.apple.audio.units.AudioUnit 1.4 /System/
Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x9428b000 - 0x9443efff com.apple.QuartzCore 1.4.8 /System/Library/
Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x94491000 - 0x944cefff libsqlite3.0.dylib /usr/lib/libsqlite3.0.dylib
0x944d6000 - 0x94526fff libGLImage.dylib /System/Library/Frameworks/
OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x946c9000 - 0x946d8fff libCGATS.A.dylib /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
CoreGraphics.framework/Versions/A/Resources/libCGATS.A.dylib
0x946e0000 - 0x946ecfff libCSync.A.dylib /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib
0x94732000 - 0x9474afff libRIP.A.dylib /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
0x95a66000 - 0x95af4fff com.apple.WebKit 418.8 /System/Library/
Frameworks/WebKit.framework/Versions/A/WebKit
0x95b50000 - 0x95be6fff com.apple.JavaScriptCore 418.3 /System/
Library/Frameworks/WebKit.framework/Versions/A/Frameworks/
JavaScriptCore.framework/Versions/A/JavaScriptCore
0x95c23000 - 0x95f2ffff com.apple.WebCore 418.20.1 /System/Library/
Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/
Versions/A/WebCore
0x960b8000 - 0x960e1fff libxslt.1.dylib /usr/lib/libxslt.1.dylib
0x96422000 - 0x96424fff com.apple.ExceptionHandling 1.2 (???) /System/
Library/Frameworks/ExceptionHandling.framework/Versions/A/
ExceptionHandling
0x96471000 - 0x96476fff com.apple.URLMount 2.1.3 /System/Library/
PrivateFrameworks/URLMount.framework/URLMount
0x97425000 - 0x97444fff com.apple.vecLib 3.2.2 (vecLib 3.2.2) /System/
Library/Frameworks/vecLib.framework/Versions/A/vecLib
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