[R-SIG-Mac] R 2.1.1 available in DarwinPorts
Jim McLoughlin
jimmcloughlin at earthlink.net
Wed Sep 7 02:57:59 CEST 2005
I just tried building from darwin ports today, and got the error
below while bulding R. To confirm, this is for darwin ports on
Tiger, right? Any help appreciated, looks like there is some kind of
symbol conflict.
---> Fetching gcc34
---> Attempting to fetch gcc-3.4.4.tar.bz2 from ftp://ftp.gnu.org/
gnu//gcc/gcc-3.4.4
---> Verifying checksum(s) for gcc34
---> Extracting gcc34
---> Applying patches to gcc34
---> Configuring gcc34
---> Building gcc34 with target bootstrap-lean
---> Staging gcc34 into destroot
---> Packaging tgz archive for gcc34 3.4.4_0+darwin_8
---> Installing gcc34 3.4.4_0+darwin_8
---> Activating gcc34 3.4.4_0+darwin_8
---> Cleaning gcc34
---> Fetching gettext
---> Attempting to fetch gettext-0.14.5.tar.gz from ftp://
ftp.gnu.org/gnu/gettext
---> Verifying checksum(s) for gettext
---> Extracting gettext
---> Configuring gettext
---> Building gettext with target all
---> Staging gettext into destroot
---> Packaging tgz archive for gettext 0.14.5_0
---> Installing gettext 0.14.5_0
---> Activating gettext 0.14.5_0
---> Cleaning gettext
---> Fetching graphviz
---> Attempting to fetch graphviz-2.2.1.tar.gz from http://
www.graphviz.org/pub/graphviz/ARCHIVE/
---> Verifying checksum(s) for graphviz
---> Extracting graphviz
---> Configuring graphviz
---> Building graphviz with target all
---> Staging graphviz into destroot
---> Packaging tgz archive for graphviz 2.2.1_4
---> Installing graphviz 2.2.1_4
---> Activating graphviz 2.2.1_4
---> Cleaning graphviz
---> Fetching texi2html
---> Attempting to fetch texi2html-1.76.tar.gz from http://
savannah.nongnu.org/download/texi2html
---> Verifying checksum(s) for texi2html
---> Extracting texi2html
---> Configuring texi2html
---> Building texi2html with target all
---> Staging texi2html into destroot
---> Packaging tgz archive for texi2html 1.76_3
---> Installing texi2html 1.76_3
---> Activating texi2html 1.76_3
---> Cleaning texi2html
---> Fetching texinfo
---> Attempting to fetch texinfo-4.8.tar.bz2 from ftp://ftp.gnu.org/
gnu/texinfo
---> Verifying checksum(s) for texinfo
---> Extracting texinfo
---> Configuring texinfo
---> Building texinfo with target all
---> Staging texinfo into destroot
---> Packaging tgz archive for texinfo 4.8_1
---> Installing texinfo 4.8_1
---> Activating texinfo 4.8_1
---> Cleaning texinfo
---> Fetching teTeX
---> Attempting to fetch tetex-src-3.0.tar.gz from ftp://
tug.ctan.org/tex-archive/systems/unix/teTeX/current/distrib/
---> Attempting to fetch tetex-texmf-3.0.tar.gz from ftp://
tug.ctan.org/tex-archive/systems/unix/teTeX/current/distrib/
---> Verifying checksum(s) for teTeX
---> Extracting teTeX
---> Configuring teTeX
---> Building teTeX with target all
---> Staging teTeX into destroot
---> Packaging tgz archive for teTeX 3.0_0
---> Installing teTeX 3.0_0
---> Activating teTeX 3.0_0
---> Cleaning teTeX
---> Fetching R
---> Attempting to fetch R-2.1.1.tar.gz from http://cran.r-
project.org/src/base/R-2/
---> Verifying checksum(s) for R
---> Extracting R
---> Configuring R
---> Building R with target all
Error: Target com.apple.build returned: shell command "cd "/opt/local/
var/db/dports/build/
file._opt_local_var_db_dports_sources_rsync.rsync.opendarwin.org_dpupdat
e_dports_math_R/work/R-2.1.1" && make all" returned error 2
Command output: gcc-3.3 -I../../src/extra/zlib -I../../src/extra/
bzip2 -I../../src/extra/pcre -no-cpp-precomp -I. -I../../src/include
-I../../src/include -I/opt/local/include -DHAVE_CONFIG_H -fno-
common -g -O2 -c startup.c -o startup.lo
gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/
extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/
include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c
subassign.c -o subassign.lo
gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/
extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/
include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c
subscript.c -o subscript.lo
gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/
extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/
include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c
subset.c -o subset.lo
gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/
extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/
include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c
summary.c -o summary.lo
gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/
extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/
include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c
sysutils.c -o sysutils.lo
gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/
extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/
include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c
unique.c -o unique.lo
gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/
extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/
include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c
util.c -o util.lo
gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/
extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/
include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c
version.c -o version.lo
gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/
extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/
include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c
vfonts.c -o vfonts.lo
g77-dp-3.4 -fno-common -g -O2 -c xxxpr.f -o xxxpr.lo
gcc-3.3 -dynamiclib -L/opt/local/lib -dynamiclib -install_name
libR.dylib -compatibility_version 2.1.0 -current_version 2.1.1 -
headerpad_max_install_names -o libR.dylib Rembedded.lo
CConverters.lo CommandLineArgs.lo Rdynload.lo Renviron.lo RNG.lo
apply.lo arithmetic.lo apse.lo array.lo attrib.lo base.lo bind.lo
builtin.lo character.lo coerce.lo colors.lo complex.lo connections.lo
context.lo cov.lo cum.lo dcf.lo datetime.lo debug.lo deparse.lo
deriv.lo dotcode.lo dounzip.lo dstruct.lo duplicate.lo engine.lo
envir.lo errors.lo eval.lo format.lo fourier.lo gevents.lo gram.lo
gram-ex.lo graphics.lo identical.lo internet.lo iosupport.lo
lapack.lo list.lo logic.lo main.lo mapply.lo match.lo memory.lo
model.lo names.lo objects.lo optim.lo optimize.lo options.lo par.lo
paste.lo pcre.lo platform.lo plot.lo plot3d.lo plotmath.lo print.lo
printarray.lo printvector.lo printutils.lo qsort.lo random.lo
regex.lo registration.lo relop.lo saveload.lo scan.lo seq.lo
serialize.lo size.lo sort.lo source.lo split.lo sprintf.lo startup.lo
subassign.lo subscript.lo subset.lo summary.lo sysutils.lo unique.lo
util.lo version.lo vfonts.lo xxxpr.lo `ls ../appl/*.lo ../nmath/
*.lo ../unix/*.lo 2>/dev/null` -framework vecLib -L/opt/local/lib/
gcc-3.4/gcc/powerpc-apple-darwin8.2.0/3.4.4 -L/opt/local/lib/gcc-3.4 -
lg2c -lgcc_s -lSystemStubs -lSystem ../extra/zlib/libz.a ../extra/
bzip2/libbz2.a ../extra/pcre/libpcre.a -lintl -liconv -lc -
lreadline -lm -liconv
ld: warning prebinding disabled because dependent library: /opt/local/
lib/gcc-3.4/libg2c.0.dylib is not prebound
ld: warning multiple definitions of symbol _xerbla_
print.lo definition of _xerbla_ in section (__TEXT,__text)
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/
vecLib.framework/Versions/A/libBLAS.dylib(single module) definition
of _xerbla_
ld: warning multiple definitions of symbol _locale_charset
/opt/local/lib/libiconv.dylib(localcharset.o) definition of
_locale_charset
/opt/local/lib/libintl.dylib(localcharset.o) definition of
_locale_charset
ld: warning multiple definitions of symbol _signgam
../nmath/lgamma.lo definition of _signgam in section (__DATA,__common)
/usr/lib/libSystem.dylib(gamma9.o) definition of _signgam
ld: Undefined symbols:
restFP
saveFP
/usr/bin/libtool: internal link edit command failed
make[3]: *** [libR.dylib] Error 1
make[2]: *** [R] Error 2
make[1]: *** [R] Error 1
make: *** [R] Error 1
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