[R-SIG-Mac] Problems compiling R-2.2.0 from source on macos 10.4.2

[Jan de Leeuw]

where does your gfortran come from ? it is probably not a good idea  
to mix
4.0.0 and 4.1.0. i have been using 4.0.1 for both from apple cvs without
problems

-- j.

On Oct 10, 2005, at 8:08 , Sean Davis wrote:

> I am trying to install R from source on macos 10.4.2.  Any  
> suggestions as to
> what the compile error below means and what I can do to fix it?
>
> Thanks,
> Sean
>
>
> sdavis$ gcc --version
> powerpc-apple-darwin8-gcc-4.0.0 (GCC) 4.0.0 20041026 (Apple  
> Computer, Inc.
> build 4061)
>
> sdavis$ gfortran --version
> GNU Fortran 95 (GCC 4.1.0 20050911 (experimental))
>
> sdavis$ ./configure --with-blas='framework vecLib' --with-lapack -- 
> with-aqua
> --with-R-shlib --with-extraincludedirs=/sw/include
> --with-extralibdirs=/sw/lib
> ....
> ....
> R is now configured for powerpc-apple-darwin8.2.0
>
>   Source directory:          .
>   Installation directory:    /Library/Frameworks
>
>   C compiler:                gcc  -g -O2
>   C++ compiler:              g++  -g -O2
>   Fortran compiler:          gfortran  -g -O2
>
>   Interfaces supported:      X11, aqua, tcltk
>   External libraries:        readline
>   Additional capabilities:   PNG, JPEG, iconv, MBCS, NLS
>   Options enabled:           framework, R profiling
>
>   Recommended packages:      yes
>
> Make ends with:
> gcc -dynamiclib -L/sw/lib -L/usr/local/lib -dynamiclib -install_name
> libR.dylib -compatibility_version 2.2.0  -current_version 2.2.0
> -headerpad_max_install_names -o libR.dylib  Rembedded.lo  
> CConverters.lo
> CommandLineArgs.lo Rdynload.lo Renviron.lo RNG.lo apply.lo  
> arithmetic.lo
> apse.lo array.lo attrib.lo base.lo bind.lo builtin.lo character.lo  
> coerce.lo
> colors.lo complex.lo connections.lo context.lo cov.lo cum.lo dcf.lo
> datetime.lo debug.lo deparse.lo deriv.lo dotcode.lo dounzip.lo  
> dstruct.lo
> duplicate.lo engine.lo envir.lo errors.lo eval.lo format.lo fourier.lo
> gevents.lo gram.lo gram-ex.lo graphics.lo identical.lo internet.lo
> iosupport.lo lapack.lo list.lo logic.lo main.lo mapply.lo match.lo  
> memory.lo
> model.lo names.lo objects.lo optim.lo optimize.lo options.lo par.lo  
> paste.lo
> pcre.lo platform.lo plot.lo plot3d.lo plotmath.lo print.lo  
> printarray.lo
> printvector.lo printutils.lo qsort.lo random.lo regex.lo  
> registration.lo
> relop.lo saveload.lo scan.lo seq.lo serialize.lo size.lo sort.lo  
> source.lo
> split.lo sprintf.lo startup.lo subassign.lo subscript.lo subset.lo
> summary.lo sysutils.lo unique.lo util.lo version.lo vfonts.lo  
> xxxpr.lo `ls
> ../appl/*.lo ../nmath/*.lo ../unix/*.lo  2>/dev/null`
> -L/usr/local/gfortran/lib/gcc/powerpc-apple-darwin8.2.0/4.1.0
> -L/usr/local/gfortran/lib -lgfortran -lgcc_s -lSystemStubs -lSystem
> ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/ 
> libpcre.a  -lintl
> -liconv -lreadline  -lm -liconv
> ld: warning multiple definitions of symbol _locale_charset
> /sw/lib/libiconv.dylib(localcharset.o) definition of _locale_charset
> /sw/lib/libintl.dylib(localcharset.lo) definition of _locale_charset
> ld: warning multiple definitions of symbol _signgam
> ../nmath/lgamma.lo definition of _signgam in section (__DATA,__common)
> /usr/lib/gcc/powerpc-apple-darwin8/4.0.0/../../../libSystem.dylib 
> (gamma9.o)
> definition of _signgam
> ld: common symbols not allowed with MH_DYLIB output format with the
> -multi_module option
> /usr/local/gfortran/lib/libgfortran.a(lock.o) definition of common
> __gfortran_ioparm (size 248)
> /usr/local/gfortran/lib/libgfortran.a(compile_options.o) definition of
> common __gfortrani_compile_options (size 8)
> /usr/local/gfortran/lib/libgfortran.a(environ.o) definition of common
> __gfortrani_options (size 92)
> /usr/local/gfortran/lib/libgfortran.a(lock.o) private external  
> definition of
> common __gfortrani_g (size 824)
> /usr/local/gfortran/lib/libgfortran.a(lock.o) private external  
> definition of
> common __gfortrani_ionml (size 4)
> /usr/local/gfortran/lib/libgfortran.a(transfer.o) private external
> definition of common __gfortrani_scratch (size 300)
> /usr/bin/libtool: internal link edit command failed
> make[3]: *** [libR.dylib] Error 1
> make[2]: *** [R] Error 2
> make[1]: *** [R] Error 1
> make: *** [R] Error 1
>
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===
Jan de Leeuw; Distinguished Professor and Chair, UCLA Department of  
Statistics;
Editor: Journal of Multivariate Analysis, Journal of Statistical  
Software
US mail: 8130 Math Sciences Bldg, Box 951554, Los Angeles, CA 90095-1554
phone (310)-825-9550;  fax (310)-206-5658;  email: deleeuw at stat.ucla.edu
.mac: jdeleeuw ++++++  aim: deleeuwjan ++++++ skype: j_deleeuw
homepages: http://gifi.stat.ucla.edu ++++++ http://www.cuddyvalley.org
   
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