[R-SIG-Mac] lme4 crashes R
Andrew Beckerman
a.beckerman at sheffield.ac.uk
Thu Aug 5 12:55:39 CEST 2004
Hi -
has anyone had success at building and running the source distribution
of lme4 from CRAN on OSX? I find that it builds, and will load as a
library, but running the lme example in lme4 causes R to crash - the
data file loads, the model appears to run, but attempting a summary()
or print() causes the crash. I notice that there is a binary of an old
version of lme4, but nothing up to date.
Running R in X-windows fails as well, producing a Bus Error.
OSX 10.3.4, R1.9.1, Dev Tools installed, g77 from HPC;
lme4_0.6-4.tar.gz.; Matrix version 0.8-10
Below is the R.bin.crash.log file.
Cheers
andrew
**********
Host Name: dyn094076.shef.ac.uk
Date/Time: 2004-08-05 11:28:33 +0100
OS Version: 10.3.4 (Build 7H63)
Report Version: 2
Command: R.bin
Path: /Library/Frameworks/R.framework/Resources/bin/R.bin
Version: 1.9.1 (R 1.9.1)
PID: 6947
Thread: 0
Exception: EXC_BAD_ACCESS (0x0001)
Codes: KERN_PROTECTION_FAILURE (0x0002) at 0x00000000
Thread 0 Crashed:
0 R.bin 0x000ecef0 Rf_isVectorAtomic + 0 (util.c:340)
1 R.bin 0x000ec578 Rf_asLogical + 0x28 (util.c:93)
2 Matrix.so 0x06511414 ssclme_sigma + 0xb0 (ssclme.c:884)
3 R.bin 0x00045024 do_dotcall + 0x2f0 (dotcode.c:521)
4 R.bin 0x0005da10 Rf_eval + 0x5d8 (eval.c:398)
5 R.bin 0x0005f944 do_set + 0xe0 (eval.c:1287)
6 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
7 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
8 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
9 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
10 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
11 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
12 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
13 R.bin 0x0005e0cc R_execClosure + 0x1fc (eval.c:651)
14 R.bin 0x0005e3e8 R_execMethod + 0x2c4 (eval.c:753)
15 methods.so 0x0535bef8 R_standardGeneric + 0x298
(methods_list_dispatch.c:610)
16 R.bin 0x00092fa0 do_standardGeneric + 0xcc (objects.c:982)
17 R.bin 0x0005da10 Rf_eval + 0x5d8 (eval.c:398)
18 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
19 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
20 R.bin 0x0005d724 Rf_eval + 0x2ec (eval.c:355)
21 R.bin 0x0005d684 Rf_eval + 0x24c (eval.c:342)
22 R.bin 0x0005d724 Rf_eval + 0x2ec (eval.c:355)
23 R.bin 0x0005d684 Rf_eval + 0x24c (eval.c:342)
24 R.bin 0x0005fbf4 Rf_evalList + 0x128 (eval.c:1360)
25 R.bin 0x0005d984 Rf_eval + 0x54c (eval.c:396)
26 R.bin 0x00060698 Rf_DispatchOrEval + 0x118 (eval.c:1664)
27 R.bin 0x000e7ad8 do_subset2 + 0x48 (subset.c:681)
28 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
29 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
30 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
31 R.bin 0x0005f944 do_set + 0xe0 (eval.c:1287)
32 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
33 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
34 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
35 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
36 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
37 R.bin 0x0005d724 Rf_eval + 0x2ec (eval.c:355)
38 R.bin 0x0005d684 Rf_eval + 0x24c (eval.c:342)
39 R.bin 0x0005d724 Rf_eval + 0x2ec (eval.c:355)
40 R.bin 0x0005d684 Rf_eval + 0x24c (eval.c:342)
41 R.bin 0x0005fbf4 Rf_evalList + 0x128 (eval.c:1360)
42 R.bin 0x0005d984 Rf_eval + 0x54c (eval.c:396)
43 R.bin 0x00060698 Rf_DispatchOrEval + 0x118 (eval.c:1664)
44 R.bin 0x000e7ad8 do_subset2 + 0x48 (subset.c:681)
45 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
46 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
47 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
48 R.bin 0x0005f944 do_set + 0xe0 (eval.c:1287)
49 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
50 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
51 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
52 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
53 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
54 R.bin 0x0005f944 do_set + 0xe0 (eval.c:1287)
55 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
56 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
57 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
58 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
59 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
60 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
61 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
62 R.bin 0x0005e0cc R_execClosure + 0x1fc (eval.c:651)
63 R.bin 0x0005e3e8 R_execMethod + 0x2c4 (eval.c:753)
64 methods.so 0x0535bef8 R_standardGeneric + 0x298
(methods_list_dispatch.c:610)
65 R.bin 0x00092fa0 do_standardGeneric + 0xcc (objects.c:982)
66 R.bin 0x0005da10 Rf_eval + 0x5d8 (eval.c:398)
67 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
68 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
69 R.bin 0x0005d724 Rf_eval + 0x2ec (eval.c:355)
70 R.bin 0x0005d724 Rf_eval + 0x2ec (eval.c:355)
71 R.bin 0x0005fb84 Rf_evalList + 0xb8 (eval.c:1350)
72 R.bin 0x0005d984 Rf_eval + 0x54c (eval.c:396)
73 R.bin 0x0005f944 do_set + 0xe0 (eval.c:1287)
74 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
75 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
76 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
77 R.bin 0x0005e0cc R_execClosure + 0x1fc (eval.c:651)
78 R.bin 0x0005e3e8 R_execMethod + 0x2c4 (eval.c:753)
79 methods.so 0x0535bef8 R_standardGeneric + 0x298
(methods_list_dispatch.c:610)
80 R.bin 0x00092fa0 do_standardGeneric + 0xcc (objects.c:982)
81 R.bin 0x0005da10 Rf_eval + 0x5d8 (eval.c:398)
82 R.bin 0x0005f944 do_set + 0xe0 (eval.c:1287)
83 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
84 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
85 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
86 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
87 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
88 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
89 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
90 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
91 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
92 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
93 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
94 R.bin 0x0005e0cc R_execClosure + 0x1fc (eval.c:651)
95 R.bin 0x0005e3e8 R_execMethod + 0x2c4 (eval.c:753)
96 methods.so 0x0535bef8 R_standardGeneric + 0x298
(methods_list_dispatch.c:610)
97 R.bin 0x00092fa0 do_standardGeneric + 0xcc (objects.c:982)
98 R.bin 0x0005da10 Rf_eval + 0x5d8 (eval.c:398)
99 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
100 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
101 R.bin 0x0005f944 do_set + 0xe0 (eval.c:1287)
102 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
103 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
104 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
105 R.bin 0x0005e0cc R_execClosure + 0x1fc (eval.c:651)
106 R.bin 0x0005e3e8 R_execMethod + 0x2c4 (eval.c:753)
107 methods.so 0x0535bef8 R_standardGeneric + 0x298
(methods_list_dispatch.c:610)
108 R.bin 0x00092fa0 do_standardGeneric + 0xcc (objects.c:982)
109 R.bin 0x0005da10 Rf_eval + 0x5d8 (eval.c:398)
110 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
111 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
112 R.bin 0x000bf4ac do_printdefault + 0x2a0 (print.c:220)
113 R.bin 0x000907e4 do_internal + 0x170 (names.c:1057)
114 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
115 R.bin 0x0005f12c do_begin + 0x88 (eval.c:1047)
116 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
117 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
118 R.bin 0x00090c78 applyMethod + 0x1d8 (objects.c:119)
119 R.bin 0x00091514 Rf_usemethod + 0x5b4 (objects.c:326)
120 R.bin 0x00091754 do_usemethod + 0x1f4 (objects.c:389)
121 R.bin 0x0005d85c Rf_eval + 0x424 (eval.c:375)
122 R.bin 0x0005de78 Rf_applyClosure + 0x390 (eval.c:566)
123 R.bin 0x0005da88 Rf_eval + 0x650 (eval.c:410)
124 R.bin 0x000c09a4 Rf_PrintValueEnv + 0x7c (print.c:776)
125 R.bin 0x00082a60 Rf_ReplIteration + 0x1f8 (main.c:255)
126 R.bin 0x00082b80 R_ReplConsole + 0x88 (main.c:299)
127 R.bin 0x00083530 run_Rmainloop + 0x78 (main.c:657)
128 R.bin 0x000ef5a4 main + 0x14 (system.c:102)
129 R.bin 0x0000205c _start + 0x17c (crt.c:267)
130 R.bin 0x00001edc start + 0x30
PPC Thread State:
srr0: 0x000ecef0 srr1: 0x0200f030 vrsave: 0x00000000
cr: 0x42022244 xer: 0x20000004 lr: 0x000ec578 ctr: 0x000ec550
r0: 0x00000000 r1: 0xbffeade0 r2: 0x08920868 r3: 0x00000000
r4: 0x40cdb6c6 r5: 0x00000000 r6: 0xbffeabf8 r7: 0x00000002
r8: 0x065054f8 r9: 0x00000034 r10: 0x0008a45c r11: 0x065310f8
r12: 0x000ec550 r13: 0x001ab3a0 r14: 0x00180f68 r15: 0x0888948c
r16: 0x00152ad4 r17: 0x0017e12c r18: 0x0017e12c r19: 0x0017d440
r20: 0x0017d440 r21: 0x000000a4 r22: 0x069a0d48 r23: 0x06511364
r24: 0x06d64364 r25: 0x00174d3c r26: 0x00000000 r27: 0x089207d0
r28: 0x08920860 r29: 0x000008ef r30: 0x00000000 r31: 0x000ec558
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vecLib.framework/Versions/A/libvMisc.dylib
0x968d0000 - 0x969b2fff libicucore.A.dylib /usr/lib/libicucore.A.dylib
0x96a20000 - 0x96ae2fff libcrypto.0.9.7.dylib
/usr/lib/libcrypto.0.9.7.dylib
0x96b40000 - 0x96b6efff libssl.0.9.7.dylib /usr/lib/libssl.0.9.7.dylib
0x96bf0000 - 0x96c7ffff ATS
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/
Frameworks/ATS.framework/Versions/A/ATS
0x96e80000 - 0x96e90fff com.apple.vecLib 3.0.1 (vecLib
3.0.1) /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
0x97510000 - 0x97518fff libbsm.dylib /usr/lib/libbsm.dylib
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