[R-SIG-Mac]RSPerl

Sat, 26 Jan 2002 16:38:08 -0800

Line 32 of RPerlEval.c. Change

void xs_init _((void));

to

void xs_init _((void)) {};

This is unrelated to the unpacking problem.

-- Jan

On Saturday, January 26, 2002, at 01:28 PM, David Firth wrote:

> Has anyone succeeded in compiling and installing the RSPerl package
> under OS X (Darwin)?
>
> I tried and got the errors below.  Any hints would be welcomed.
>
> [Incidentally (well, is it incidental? I don't seem to have this problem
> so far with other R packages), I couldn't run R CMD INSTALL directly on
> the gzipped tar file:
>
> david% R CMD INSTALL -c /Users/david/Desktop/RSPerl.tar.gz
> ERROR: cannot extract package from /Users/david/Desktop/RSPerl.tar.gz
>
> --- instead I had to unzip and untar myself, then run R CMD INSTALL
> on the RSPerl source directory.  I don't know why.]
>
> Regards,
> David
>
> ----------------------------------------------
> david% R CMD INSTALL -c RSPerl
> Installing *source* package `RSPerl' ...
> loading cache ./config.cache
> checking for perl... (cached) /usr/local/bin/perl
> Using '/usr/local/bin/perl' as the perl executable
> Perl modules:
> modules: ; linking:
> Support R in Perl:
> creating ./config.status
> creating src/Makevars
> creating R/RSUtils.S
> creating inst/scripts/RSPerl.csh
> creating src/RinPerlMakefile
> creating cleanup
> creating src/Makefile.PL
>  libs
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c Converters.c -o Converters.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c ForeignReference.c -o ForeignReference.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c RPerlElements.c -o RPerlElements.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c RPerlEval.c -o RPerlEval.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c RPerlInit.c -o RPerlInit.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c RPerlNew.c -o RPerlNew.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c RPerlReference.c -o RPerlReference.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c RPerlVars.c -o RPerlVars.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c Reflectance.c -o Reflectance.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c Utils.c -o Utils.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -I/usr/local/R-1.4.0/lib/R/include -I.  -g -pipe -pipe -fno-common 
> -no-cpp-precomp -flat_namespace -DHAS_TELLDIR_PROTOTYPE 
> -fno-strict-aliasing  -I/System/Library/Perl/darwin/CORE  
> -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -I/sw/include   
> -fno-common  -g -O2 -c tryEval.c -o tryEval.o
> gcc: -flat_namespace: linker input file unused since linking not done
> gcc -bundle -bundle_loader /usr/local/R-1.4.0/lib/R/bin/R.bin  -o 
> RSPerl.so Converters.o ForeignReference.o RPerlElements.o RPerlEval.o 
> RPerlInit.o RPerlNew.o RPerlReference.o RPerlVars.o Reflectance.o 
> Utils.o tryEval.o    
> /System/Library/Perl/darwin/auto/DynaLoader/DynaLoader.a 
> -L/System/Library/Perl/darwin/CORE -lperl -lm -lc  -L/usr/local/lib
> /usr/bin/ld: warning multiple definitions of symbol _regcomp
> /usr/local/R-1.4.0/lib/R/bin/R.bin definition of _regcomp
> /usr/lib/libm.dylib(regcomp.o) definition of _regcomp
> /usr/bin/ld: warning multiple definitions of symbol _regexec
> /usr/local/R-1.4.0/lib/R/bin/R.bin definition of _regexec
> /usr/lib/libm.dylib(regexec.o) definition of _regexec
> /usr/bin/ld: warning multiple definitions of symbol _regfree
> /usr/local/R-1.4.0/lib/R/bin/R.bin definition of _regfree
> /usr/lib/libm.dylib(regfree.o) definition of _regfree
> /usr/bin/ld: Undefined symbols:
> _xs_init
> /usr/bin/ld: warning unused multiple definitions of symbol _matherr
> /usr/local/R-1.4.0/lib/R/bin/R.bin definition of _matherr
> /usr/lib/libm.dylib(s_matherr.o) unused definition of _matherr
> /usr/bin/ld: warning unused multiple definitions of symbol _regerror
> /usr/local/R-1.4.0/lib/R/bin/R.bin definition of _regerror
> /usr/lib/libm.dylib(regerror.o) unused definition of _regerror
> /usr/bin/ld: warning unused multiple definitions of symbol _signgam
> /usr/local/R-1.4.0/lib/R/bin/R.bin definition of _signgam
> /usr/lib/libm.dylib(s_signgam.o) unused definition of _signgam
> make: *** [RSPerl.so] Error 1
> ERROR: compilation failed for package `RSPerl'
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===
Jan de Leeuw; Professor and Chair, UCLA Department of Statistics;
US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554
phone (310)-825-9550;  fax (310)-206-5658;  email: deleeuw@stat.ucla.edu
homepage: http://www.stat.ucla.edu/~deleeuw
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           No matter where you go, there you are. --- Buckaroo Banzai
                    http://www.stat.ucla.edu/~deleeuw/sounds/nomatter.au
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