Thank you very much Edward and Bjørn-Helge... I've figured out how linking the path of mpi.h files to rmpi in our system; as, install.packages("Rmpi", configure.args = c("--with-Rmpi-include=/usr/mpi/intel/openmpi-1.2.8/include/", "--with-Rmpi-libpath=/usr/mpi/intel/openmpi-1.2.8/lib64/", "--with-Rmpi-type=OPENMPI")) This code works, but the locked memory size prevents to complete the initialisation. Now I am waiting the admin to increase it. Regards, Semra On Mon, Sep 24, 2012 at 1:57 PM, Bjørn-Helge Mevik wrote: > semra yalcin writes: > > > I have a problem with installation of Rmpi on my account at the hpc. I've > > tried to install Rmpi with different ways, but unfortunately I couldn't > > achieve it. > > > > OS of hpc is Scientific Linux v5.2 64 bit. Installed version of openMPI > is > > 1.2.8. I have R 2.15.1 installed on my home folder. And I have no access > to > > the root. > > (OpenMPI 1.2.8 is quite old. I think the current version is 1.6.1.) > > I've just installed Rmpi on our cluster, running Rocks 6.0 (based on > CentOS 6.2). We have installed OpenMPI in > /cluster/software/VERSIONS/openmpi-1.6.1. > > I did the following to install Rmpi: > > Make sure the following variables are set before installing Rmpi or > using it later on: > > Add /cluster/software/VERSIONS/openmpi-1.6.1/bin to $PATH > Add /cluster/software/VERSIONS/openmpi-1.6.1/lib to $LD_LIBRARY_PATH > Add /cluster/software/VERSIONS/openmpi-1.6.1/share/man to $MANPATH > Add /cluster/software/VERSIONS/openmpi-1.6.1/include to $CPATH > > (We use the Modules package for this.) > > Then I started R and installed Rmpi with > > install.packages("Rmpi", configure.args = > "--with-mpi=/cluster/software/VERSIONS/openmpi-1.6.1") > > > -- > Regards, > Bjørn-Helge Mevik, dr. scient, > Research Computing Services, University of Oslo > > _______________________________________________ > R-sig-hpc mailing list > R-sig-hpc@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-hpc > [[alternative HTML version deleted]]