Dear all,

I am trying to install Rmpi using openmpi on centos cluster.  This is a
 huge cluster hosted by texas state.  Here's the error I got.  Please help.
 (I have tried really hard to google the answer with no avail).


>   install.packages("Rmpi", configure.args=c("
--with-Rmpi-include=/share/apps/pgi7_2/openmpi/1.3/include", "
--with-Rmpi-libpath=/share/apps/pgi7_2/openmpi/1.3/lib/",
"--with-Rmpi-type=OPENMPI"), lib="~/R/library/")
trying URL 'http://cran.mirrors.hoobly.com/src/contrib/Rmpi_0.5-9.tar.gz'
Content type 'application/x-gzip' length 87953 bytes (85 Kb)
opened URL
==================================================
downloaded 85 Kb

* installing *source* package 'Rmpi' ...
checking for openpty in -lutil... no
checking for main in -lpthread... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/opt/apps/R/2.12.1/lib64/R/include -DPACKAGE_NAME=\"\"
-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
-DPACKAGE_BUGREPORT=\"\" -I/share/apps/pgi7_2/openmpi/1.3/include  -DMPI2
-DOPENMPI -I/usr/local/include    -fpic  -g -O2 -c RegQuery.c -o RegQuery.o
gcc -std=gnu99 -I/opt/apps/R/2.12.1/lib64/R/include -DPACKAGE_NAME=\"\"
-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
-DPACKAGE_BUGREPORT=\"\" -I/share/apps/pgi7_2/openmpi/1.3/include  -DMPI2
-DOPENMPI -I/usr/local/include    -fpic  -g -O2 -c Rmpi.c -o Rmpi.o
gcc -std=gnu99 -I/opt/apps/R/2.12.1/lib64/R/include -DPACKAGE_NAME=\"\"
-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
-DPACKAGE_BUGREPORT=\"\" -I/share/apps/pgi7_2/openmpi/1.3/include  -DMPI2
-DOPENMPI -I/usr/local/include    -fpic  -g -O2 -c conversion.c -o
conversion.o
gcc -std=gnu99 -I/opt/apps/R/2.12.1/lib64/R/include -DPACKAGE_NAME=\"\"
-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
-DPACKAGE_BUGREPORT=\"\" -I/share/apps/pgi7_2/openmpi/1.3/include  -DMPI2
-DOPENMPI -I/usr/local/include    -fpic  -g -O2 -c internal.c -o internal.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o Rmpi.so RegQuery.o Rmpi.o
conversion.o internal.o -L/share/apps/pgi7_2/openmpi/1.3/lib/ -lmpi
installing to /share/home/01778/zhandong/R/library/Rmpi/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Error: in routine alloca() there is a
stack overflow: thread 0, max 535822261KB, used 0KB, request 48B

The downloaded packages are in
        '/tmp/Rtmp0iz5Bo/downloaded_packages'
Warning message:
In install.packages("Rmpi", configure.args = c("
--with-Rmpi-include=/share/apps/pgi7_2/openmpi/1.3/include",  :
  installation of package 'Rmpi' had non-zero exit status


Man thanks.

Regards,

Zack.

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