Hi all

I tried to install gputools on Ubuntu Jaunty Jackalope but got the following errors:


erin@erin-laptop:~/Desktop/R-2.9.2/bin$ ./R CMD INSTALL gputools_0.1-3.tar.gz 
* Installing to library ‘/home/erin/Desktop/R-2.9.2/library’
* Installing *source* package ‘gputools’ ...
checking "environment variable CUDA_HOME"... "CUDA_HOME not set; using default /usr/local/cuda"
checking for /usr/local/cuda/bin/nvcc... yes
"nvcc found"
checking "whether this is the 64 bit linux version of CUDA"... checking for /usr/local/cuda/lib64/libcublas.so... no
"no -- using /usr/local/cuda/lib for CUDA libs"
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
R was not built as a library
R was not built as a library
configure: creating ./config.status
config.status: creating src/Makefile
config.status: creating R/gpuSvm.R
** libs
** arch - 
/usr/local/cuda/bin/nvcc -c -I/usr/local/cuda/include -Xcompiler " -fpic" rinterface.cu -o rinterface.o
rinterface.cu:17:14: error: R.h: No such file or directory
make: *** [rinterface.o] Error 255
ERROR: compilation failed for package ‘gputools’
* Removing ‘/home/erin/Desktop/R-2.9.2/library/gputools’
erin@erin-laptop:~/Desktop/R-2.9.2/bin$ 


Has anyone run into this please?

Thanks,
Erin


Erin M. Hodgess, PhD
Associate Professor
Department of Computer and Mathematical Sciences
University of Houston - Downtown
mailto: hodgesse@uhd.edu



-----Original Message-----
From: r-sig-hpc-bounces@r-project.org on behalf of Tim Triche
Sent: Mon 9/14/2009 5:01 AM
To: natorro@fisica.unam.mx
Cc: r-sig-hpc@r-project.org
Subject: Re: [R-sig-hpc] Using GPU, CUDA with R
 
http://brainarray.mbni.med.umich.edu/brainarray/rgpgpu/



On Mon, Sep 14, 2009 at 2:47 AM, Carlos López <carlos.ifisica@gmail.com>wrote:

> Hello everybody I have been reading a little bit about CUDA and it's
> applications using the power of the GPU to increase computing power using
> "off-the-shelf" componentes, has anyone here knows about any effort for
> using this technology with R?
>
> Thank you very much
> Carlos López
> Physics Institute, UNAM, Mexico
>
> _______________________________________________
> R-sig-hpc mailing list
> R-sig-hpc@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-hpc
>



-- 
Statisticians, like artists, have a bad habit of falling in love with their
models.
--George Box

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