[R-sig-hpc] Installing R-3.3 on a HPC cluster
siavoa01 at nyumc.org
Thu May 5 18:49:23 CEST 2016
I recently started having problem installing R using the source code on our cluster. The cluster runs on CentOS 6.4 and
[root at phoenix2 siavoa01]# uname -a
Linux phoenix2 2.6.32-573.22.1.el6.x86_64 #1 SMP Wed Mar 23 03:35:39 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
It sucks it the following step inspire the fact that I installed the latest bzip2 available and the include/ and lib/ of it is already included in $CPATH and $LIB (I tried the R-3.3 and also previous R-devel):
checking if bzip2 version >= 1.0.6... no
checking whether bzip2 support suffices... configure: error: bzip2 library and headers are required
[root at phoenix2 R-3.3.0]# which bzip2
[root at phoenix2 R-3.3.0]# bzip2 -V
bzip2, a block-sorting file compressor. Version 1.0.6, 6-Sept-2010.
Copyright (C) 1996-2010 by Julian Seward.
This program is free software; you can redistribute it and/or modify
it under the terms set out in the LICENSE file, which is included
in the bzip2-1.0.6 source distribution.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
LICENSE file for more details.
bzip2: I won't write compressed data to a terminal.
bzip2: For help, type: `bzip2 --help'.
Ali Siavosh-Haghighi, Ph.D.
HPC System Administrator
High Performance Computing Facility
Center for Health Informatics and Bioinformatics
NYU Langone Medical Center
Phone: (646) 501-2907
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