[R-sig-hpc] Basic PBS question

[George Ostrouchov]

Since you are running in batch on a cluster, I would recommend looking 
at package pbdDEMO and reading its vignette.

George

On 11/16/14 1:48 PM, Brian Smith wrote:
> Hi,
>
> I am trying to get started on our Moab cluster. My pbs script looks like:
>
> ======= test.pbs ============
> #!/bin/sh
>
> #PBS -N job_name
> #PBS -l nodes=1:ppn=3
> #PBS -q debugq
>
> module load R
> cd $PBS_O_WORKDIR
>
> mpirun -rmk pbs R --slave CMD BATCH ./test.r
>
> ======== test.r ============
>
> print('hello world')
>
>
> To submit my job, I use:
>
> msub test.pbs
>
> When I execute this, the .Rout file contains 'hello world' and everything
> looks ok. However, how can I get each processor to write out something like:
>
> 'hello world from 1'
> 'hello world from 2'
> 'hello world from 3'
>
> How can I get the processor number as an input to the r script?
>
> many thanks!
>
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>
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