[R-sig-hpc] Rmpi: -lopa parameter on compiling needed? Works without

[Arne Hendrik Schulz]

Hi all,
I am using the current development version of Rmpi (0.6-4) on a Cray
Cluster. The problem is that it does not compile with the -lopa parameter as
opa.c/libopa.c is not installed on the cluster (see attachted output below).
Compiling Rmpi without the -lopa parameter works and using the cluster with
MPI works, too. Is it really necessary to include libopa? I cannot see any
drawbacks so far.

Kind regards,
Arne

P.S.: If anyone would like to test without -lopa, I uploaded a branch of
Rmpi-0.6-4: http://www.ahschulz.de/pub/R/packages/Rmpi_0.6-4_branch.tar.gz
--with-Rmpi-type=CRAY uses the -lopa parameter, --with-Rmpi-type=CRAY_NOLOPA
dies not.

Installing Rmpi with -lopa:
R/bin/R CMD INSTALL temp/packages/Rmpi_0.6-4.tar.gz
--configure-args="--with-Rmpi-include=/opt/cray/mpt/6.1.1/gni/mpich2-cray64/
81/include --with-Rmpi-libpath=/opt/cray/mpt/6.1.1/gni/mpich2-cray64/81/lib
--with-Rmpi-type=CRAY" --no-test-load
* installing to library '/gfs1/work/hbmahs32/R/lib64/R/library'
* installing *source* package 'Rmpi' ...
checking for openpty in -lutil... no
checking for main in -lpthread... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
(...)
gcc -std=gnu99 -shared -L/usr/local/lib64 -o Rmpi.so RegQuery.o Rmpi.o
conversion.o internal.o -L/opt/cray/mpt/6.1.1/gni/mpich2-cray64/81/lib
-lmpich_cray_default64 -lmpl -lopa
/usr/bin/ld: cannot find -lopa
collect2: error: ld returned 1 exit status
make: *** [Rmpi.so] Error 1
ERROR: compilation failed for package 'Rmpi'


Installing Rmpi without -lopa
R/bin/R CMD INSTALL temp/packages/Rmpi_0.6-4_branch.tar.gz
--configure-args="--with-Rmpi-include=/opt/cray/mpt/6.1.1/gni/mpich2-cray64/
81/include --with-Rmpi-libpath=/opt/cray/mpt/6.1.1/gni/mpich2-cray64/81/lib
--with-Rmpi-type=CRAY_NOLOPA" --no-test-load
* installing to library '/gfs1/work/hbmahs32/R/lib64/R/library'
* installing *source* package 'Rmpi' ...
checking for openpty in -lutil... no
checking for main in -lpthread... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
(...)
gcc -std=gnu99 -shared -L/usr/local/lib64 -o Rmpi.so RegQuery.o Rmpi.o
conversion.o internal.o -L/opt/cray/mpt/6.1.1/gni/mpich2-cray64/81/lib
-lmpich_cray_default64 -lmpl
installing to /gfs1/work/hbmahs32/R/lib64/R/library/Rmpi/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
* DONE (Rmpi)

-- 
Arne Hendrik Schulz

ifib: Institute for Information Managment Bremen
Am Fallturm 1 (entrance F)
28359 Bremen
Germany

Tel.: +49 (0)421 218 56585
Fax: +49 (0)421 218 56599
E-Mail: ahschulz at ifib.de

Web: www.ifib.de


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