[R-sig-hpc] issue building R 2.12.1 on CrayXT
Tom Hilinski
tom.hilinski at colostate.edu
Wed Feb 9 00:31:51 CET 2011
Hi, I'm having an issue building R successfully on a Cray XT system. If
you can suggest a solution, I would be very appreciative.
Am building with gcc 4.4 module installed.
configure cmd:
./configure --prefix=<cut> CC=cc CXX=CC FC=ftn F77=ftn F90=ftn
--without-x --without-blas --without-lapack --disable-shared
--disable-R-profiling
I've omitted the last 2 options w/out any change in the issues.
So here's what I'm coming up with:
While the base packages are being built, I get a dynamic load error:
make[6]: Entering directory `<cut>/R-2.12.1/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[6]: Leaving directory `<cut>/R-2.12.1/src/library/tools/src'
make[5]: Leaving directory `<cut>/R-2.12.1/src/library/tools/src'
make[4]: Leaving directory `<cut>/R-2.12.1/src/library/tools'
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'<cut>/R-2.12.1/library/tools/libs/tools.so':
<cut>/R-2.12.1/library/tools/libs/tools.so: undefined symbol: R_NaString
Calls: ::: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
make[3]: *** [all] Error 1
There is a file "library/tools/libs/tools.so".
Any ideas as to the cause?
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